Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26799 | 5' | -57.5 | NC_005808.1 | + | 818 | 0.71 | 0.27954 |
Target: 5'- cGCCCAGC--CCuuGCCGAa--CGUCGg -3' miRNA: 3'- -CGGGUCGuaGGggCGGCUguaGUAGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 6396 | 0.72 | 0.252412 |
Target: 5'- cGCCgCGGCGcCCUCGgUGAUGUCGUCGa -3' miRNA: 3'- -CGG-GUCGUaGGGGCgGCUGUAGUAGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 31328 | 0.72 | 0.245978 |
Target: 5'- gGCCgAGCGUCCCagCGCCGcagcGCAaacccUCAUCGc -3' miRNA: 3'- -CGGgUCGUAGGG--GCGGC----UGU-----AGUAGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 24934 | 0.72 | 0.252412 |
Target: 5'- cGCCCAGC----CCGCCGACG-CAUCa -3' miRNA: 3'- -CGGGUCGuaggGGCGGCUGUaGUAGc -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 14361 | 0.73 | 0.204681 |
Target: 5'- aGCCUGGCGcaguccgaCCCGCgCGugGUCGUCGg -3' miRNA: 3'- -CGGGUCGUag------GGGCG-GCugUAGUAGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 5914 | 0.73 | 0.21019 |
Target: 5'- cGUCCGGCAUCUuuucgCCGCUGGCggCAUCc -3' miRNA: 3'- -CGGGUCGUAGG-----GGCGGCUGuaGUAGc -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 5105 | 0.73 | 0.215827 |
Target: 5'- gGCCCAGCGUCCggugCgGCUGGCGcCGUUGa -3' miRNA: 3'- -CGGGUCGUAGG----GgCGGCUGUaGUAGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 19167 | 0.73 | 0.215827 |
Target: 5'- aUCC-GCAUCCCgGCCGGCGUCGc-- -3' miRNA: 3'- cGGGuCGUAGGGgCGGCUGUAGUagc -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 17430 | 0.73 | 0.215827 |
Target: 5'- cGCCCuugAGCAguggCCCCGCCaGCAUCGa-- -3' miRNA: 3'- -CGGG---UCGUa---GGGGCGGcUGUAGUagc -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 27203 | 0.74 | 0.160524 |
Target: 5'- cGUCCGGCAUCUUCGCCGGCccgCAcgCGg -3' miRNA: 3'- -CGGGUCGUAGGGGCGGCUGua-GUa-GC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 35415 | 0.74 | 0.180927 |
Target: 5'- aGCCCAGCGUcgcCCCCGaauCCGACAagcgcccggcccuggUCAUCc -3' miRNA: 3'- -CGGGUCGUA---GGGGC---GGCUGU---------------AGUAGc -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 12291 | 0.74 | 0.178981 |
Target: 5'- gGCCCAGCGUgCCgGCuaCGGCggCGUCGa -3' miRNA: 3'- -CGGGUCGUAgGGgCG--GCUGuaGUAGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 17027 | 0.75 | 0.1438 |
Target: 5'- aCCgCGGCGuacaacUCCgaCGCCGACAUCAUCGg -3' miRNA: 3'- cGG-GUCGU------AGGg-GCGGCUGUAGUAGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 10057 | 0.77 | 0.115047 |
Target: 5'- cGCCggcggCAGCAUCCUgGCCGGCAUCAcCa -3' miRNA: 3'- -CGG-----GUCGUAGGGgCGGCUGUAGUaGc -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 37977 | 1.09 | 0.000429 |
Target: 5'- gGCCCAGCAUCCCCGCCGACAUCAUCGc -3' miRNA: 3'- -CGGGUCGUAGGGGCGGCUGUAGUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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