Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26799 | 5' | -57.5 | NC_005808.1 | + | 27203 | 0.74 | 0.160524 |
Target: 5'- cGUCCGGCAUCUUCGCCGGCccgCAcgCGg -3' miRNA: 3'- -CGGGUCGUAGGGGCGGCUGua-GUa-GC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 27455 | 0.7 | 0.324495 |
Target: 5'- cGCCCugggcGCAUCCgCCGCCaGCAUgggGUCGg -3' miRNA: 3'- -CGGGu----CGUAGG-GGCGGcUGUAg--UAGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 27746 | 0.69 | 0.340631 |
Target: 5'- cGCCCAGCGUgCggcgcuggCCGCCaACggCAUCGa -3' miRNA: 3'- -CGGGUCGUAgG--------GGCGGcUGuaGUAGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 28863 | 0.66 | 0.51003 |
Target: 5'- uCCCAGCG-CCgCGCC-ACGUCcUCGc -3' miRNA: 3'- cGGGUCGUaGGgGCGGcUGUAGuAGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 29430 | 0.69 | 0.365906 |
Target: 5'- cGCCCAGCGcggccgacaCUgGCCGACAUCGa-- -3' miRNA: 3'- -CGGGUCGUag-------GGgCGGCUGUAGUagc -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 31328 | 0.72 | 0.245978 |
Target: 5'- gGCCgAGCGUCCCagCGCCGcagcGCAaacccUCAUCGc -3' miRNA: 3'- -CGGgUCGUAGGG--GCGGC----UGU-----AGUAGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 33191 | 0.66 | 0.531105 |
Target: 5'- cGCCCucGGCAcggCCaCCGCUGGCuAUCG-CGg -3' miRNA: 3'- -CGGG--UCGUa--GG-GGCGGCUG-UAGUaGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 33999 | 0.67 | 0.468996 |
Target: 5'- cGCCUAcGcCAUCCCCacggucGCCGugAcCGUCGu -3' miRNA: 3'- -CGGGU-C-GUAGGGG------CGGCugUaGUAGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 34431 | 0.69 | 0.374614 |
Target: 5'- -gCCAGCGccUUCCUggGCCG-CAUCAUCGa -3' miRNA: 3'- cgGGUCGU--AGGGG--CGGCuGUAGUAGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 35415 | 0.74 | 0.180927 |
Target: 5'- aGCCCAGCGUcgcCCCCGaauCCGACAagcgcccggcccuggUCAUCc -3' miRNA: 3'- -CGGGUCGUA---GGGGC---GGCUGU---------------AGUAGc -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 37977 | 1.09 | 0.000429 |
Target: 5'- gGCCCAGCAUCCCCGCCGACAUCAUCGc -3' miRNA: 3'- -CGGGUCGUAGGGGCGGCUGUAGUAGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 38008 | 0.66 | 0.541762 |
Target: 5'- gGCCgAGCAguUCCUCGCCuGGCG-CAcCGa -3' miRNA: 3'- -CGGgUCGU--AGGGGCGG-CUGUaGUaGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 38263 | 0.66 | 0.541762 |
Target: 5'- cGgCCAGCAUCaagGCUGGCAcCAUCGu -3' miRNA: 3'- -CgGGUCGUAGgggCGGCUGUaGUAGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 40310 | 0.68 | 0.420206 |
Target: 5'- cCCCAGCAUCgaCCGCgCGGCAcuguacgcgaUgAUCGa -3' miRNA: 3'- cGGGUCGUAGg-GGCG-GCUGU----------AgUAGC- -5' |
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26799 | 5' | -57.5 | NC_005808.1 | + | 41795 | 0.67 | 0.468996 |
Target: 5'- aGCCCAGCca-CCUGCUGACGg---CGa -3' miRNA: 3'- -CGGGUCGuagGGGCGGCUGUaguaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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