miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26799 5' -57.5 NC_005808.1 + 27203 0.74 0.160524
Target:  5'- cGUCCGGCAUCUUCGCCGGCccgCAcgCGg -3'
miRNA:   3'- -CGGGUCGUAGGGGCGGCUGua-GUa-GC- -5'
26799 5' -57.5 NC_005808.1 + 27455 0.7 0.324495
Target:  5'- cGCCCugggcGCAUCCgCCGCCaGCAUgggGUCGg -3'
miRNA:   3'- -CGGGu----CGUAGG-GGCGGcUGUAg--UAGC- -5'
26799 5' -57.5 NC_005808.1 + 27746 0.69 0.340631
Target:  5'- cGCCCAGCGUgCggcgcuggCCGCCaACggCAUCGa -3'
miRNA:   3'- -CGGGUCGUAgG--------GGCGGcUGuaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 28863 0.66 0.51003
Target:  5'- uCCCAGCG-CCgCGCC-ACGUCcUCGc -3'
miRNA:   3'- cGGGUCGUaGGgGCGGcUGUAGuAGC- -5'
26799 5' -57.5 NC_005808.1 + 29430 0.69 0.365906
Target:  5'- cGCCCAGCGcggccgacaCUgGCCGACAUCGa-- -3'
miRNA:   3'- -CGGGUCGUag-------GGgCGGCUGUAGUagc -5'
26799 5' -57.5 NC_005808.1 + 31328 0.72 0.245978
Target:  5'- gGCCgAGCGUCCCagCGCCGcagcGCAaacccUCAUCGc -3'
miRNA:   3'- -CGGgUCGUAGGG--GCGGC----UGU-----AGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 33191 0.66 0.531105
Target:  5'- cGCCCucGGCAcggCCaCCGCUGGCuAUCG-CGg -3'
miRNA:   3'- -CGGG--UCGUa--GG-GGCGGCUG-UAGUaGC- -5'
26799 5' -57.5 NC_005808.1 + 33999 0.67 0.468996
Target:  5'- cGCCUAcGcCAUCCCCacggucGCCGugAcCGUCGu -3'
miRNA:   3'- -CGGGU-C-GUAGGGG------CGGCugUaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 34431 0.69 0.374614
Target:  5'- -gCCAGCGccUUCCUggGCCG-CAUCAUCGa -3'
miRNA:   3'- cgGGUCGU--AGGGG--CGGCuGUAGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 35415 0.74 0.180927
Target:  5'- aGCCCAGCGUcgcCCCCGaauCCGACAagcgcccggcccuggUCAUCc -3'
miRNA:   3'- -CGGGUCGUA---GGGGC---GGCUGU---------------AGUAGc -5'
26799 5' -57.5 NC_005808.1 + 37977 1.09 0.000429
Target:  5'- gGCCCAGCAUCCCCGCCGACAUCAUCGc -3'
miRNA:   3'- -CGGGUCGUAGGGGCGGCUGUAGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 38008 0.66 0.541762
Target:  5'- gGCCgAGCAguUCCUCGCCuGGCG-CAcCGa -3'
miRNA:   3'- -CGGgUCGU--AGGGGCGG-CUGUaGUaGC- -5'
26799 5' -57.5 NC_005808.1 + 38263 0.66 0.541762
Target:  5'- cGgCCAGCAUCaagGCUGGCAcCAUCGu -3'
miRNA:   3'- -CgGGUCGUAGgggCGGCUGUaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 40310 0.68 0.420206
Target:  5'- cCCCAGCAUCgaCCGCgCGGCAcuguacgcgaUgAUCGa -3'
miRNA:   3'- cGGGUCGUAGg-GGCG-GCUGU----------AgUAGC- -5'
26799 5' -57.5 NC_005808.1 + 41795 0.67 0.468996
Target:  5'- aGCCCAGCca-CCUGCUGACGg---CGa -3'
miRNA:   3'- -CGGGUCGuagGGGCGGCUGUaguaGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.