miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26799 5' -57.5 NC_005808.1 + 12628 0.69 0.38257
Target:  5'- cGCUCGGCAUCgCUGCUGcCGUCcuuuggcGUCGg -3'
miRNA:   3'- -CGGGUCGUAGgGGCGGCuGUAG-------UAGC- -5'
26799 5' -57.5 NC_005808.1 + 14361 0.73 0.204681
Target:  5'- aGCCUGGCGcaguccgaCCCGCgCGugGUCGUCGg -3'
miRNA:   3'- -CGGGUCGUag------GGGCG-GCugUAGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 15207 0.69 0.383461
Target:  5'- cGCCgauGGCgAUUUCCGCCGACAUCGa-- -3'
miRNA:   3'- -CGGg--UCG-UAGGGGCGGCUGUAGUagc -5'
26799 5' -57.5 NC_005808.1 + 17027 0.75 0.1438
Target:  5'- aCCgCGGCGuacaacUCCgaCGCCGACAUCAUCGg -3'
miRNA:   3'- cGG-GUCGU------AGGg-GCGGCUGUAGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 17430 0.73 0.215827
Target:  5'- cGCCCuugAGCAguggCCCCGCCaGCAUCGa-- -3'
miRNA:   3'- -CGGG---UCGUa---GGGGCGGcUGUAGUagc -5'
26799 5' -57.5 NC_005808.1 + 19035 0.66 0.51003
Target:  5'- cGCCC-GCA--CCUGCCGGCGaUGUCGg -3'
miRNA:   3'- -CGGGuCGUagGGGCGGCUGUaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 19037 0.67 0.489312
Target:  5'- aGCCCugguAGCGg--CCGCCGGCggCGUCGn -3'
miRNA:   3'- -CGGG----UCGUaggGGCGGCUGuaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 19066 0.7 0.324495
Target:  5'- -aUCAGCguGUCCUCGCCGAgGUCAcgCGa -3'
miRNA:   3'- cgGGUCG--UAGGGGCGGCUgUAGUa-GC- -5'
26799 5' -57.5 NC_005808.1 + 19167 0.73 0.215827
Target:  5'- aUCC-GCAUCCCgGCCGGCGUCGc-- -3'
miRNA:   3'- cGGGuCGUAGGGgCGGCUGUAGUagc -5'
26799 5' -57.5 NC_005808.1 + 19966 0.67 0.478086
Target:  5'- aCCCAGguUUCgggcaggCCGCCGAUGUCcgCGu -3'
miRNA:   3'- cGGGUCguAGG-------GGCGGCUGUAGuaGC- -5'
26799 5' -57.5 NC_005808.1 + 20598 0.66 0.531105
Target:  5'- cCUCGGUAUCCuUCGCCaGGCggCGUCGc -3'
miRNA:   3'- cGGGUCGUAGG-GGCGG-CUGuaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 22984 0.68 0.439359
Target:  5'- gGCCC-GCAUgaCCCCGgaCGGCAagAUCGa -3'
miRNA:   3'- -CGGGuCGUA--GGGGCg-GCUGUagUAGC- -5'
26799 5' -57.5 NC_005808.1 + 24562 0.67 0.479101
Target:  5'- gGCCCccaAGCAg-CCCGCCGACAa----- -3'
miRNA:   3'- -CGGG---UCGUagGGGCGGCUGUaguagc -5'
26799 5' -57.5 NC_005808.1 + 24594 0.67 0.459001
Target:  5'- cGUCCGGCguGUCCuuGCCGGgGUaggucagcggcaCGUCGa -3'
miRNA:   3'- -CGGGUCG--UAGGggCGGCUgUA------------GUAGC- -5'
26799 5' -57.5 NC_005808.1 + 24934 0.72 0.252412
Target:  5'- cGCCCAGC----CCGCCGACG-CAUCa -3'
miRNA:   3'- -CGGGUCGuaggGGCGGCUGUaGUAGc -5'
26799 5' -57.5 NC_005808.1 + 25509 0.66 0.499623
Target:  5'- gGCCCGGCcgagaaCCgCGCCGGCuUCGccuUCGu -3'
miRNA:   3'- -CGGGUCGua----GGgGCGGCUGuAGU---AGC- -5'
26799 5' -57.5 NC_005808.1 + 25649 0.66 0.531105
Target:  5'- cCUCGGCGagUUCUGCCGGCGUCAUg- -3'
miRNA:   3'- cGGGUCGUa-GGGGCGGCUGUAGUAgc -5'
26799 5' -57.5 NC_005808.1 + 25936 0.7 0.293951
Target:  5'- gGCCCAGCAugUCCCgCGCUuGACcuuguagccGUCGUCc -3'
miRNA:   3'- -CGGGUCGU--AGGG-GCGG-CUG---------UAGUAGc -5'
26799 5' -57.5 NC_005808.1 + 26250 0.67 0.468996
Target:  5'- cGCCgaaGGCAcgggCaCCCGCCGGCcUgGUCGg -3'
miRNA:   3'- -CGGg--UCGUa---G-GGGCGGCUGuAgUAGC- -5'
26799 5' -57.5 NC_005808.1 + 26995 0.67 0.479101
Target:  5'- -gUCAGCAUCCUgGCCGAUggCG-CGg -3'
miRNA:   3'- cgGGUCGUAGGGgCGGCUGuaGUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.