miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26799 5' -57.5 NC_005808.1 + 34431 0.69 0.374614
Target:  5'- -gCCAGCGccUUCCUggGCCG-CAUCAUCGa -3'
miRNA:   3'- cgGGUCGU--AGGGG--CGGCuGUAGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 12628 0.69 0.38257
Target:  5'- cGCUCGGCAUCgCUGCUGcCGUCcuuuggcGUCGg -3'
miRNA:   3'- -CGGGUCGUAGgGGCGGCuGUAG-------UAGC- -5'
26799 5' -57.5 NC_005808.1 + 5547 0.69 0.383461
Target:  5'- cGCCCAG-GUCgCCCGCC-ACggUAUCGa -3'
miRNA:   3'- -CGGGUCgUAG-GGGCGGcUGuaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 15207 0.69 0.383461
Target:  5'- cGCCgauGGCgAUUUCCGCCGACAUCGa-- -3'
miRNA:   3'- -CGGg--UCG-UAGGGGCGGCUGUAGUagc -5'
26799 5' -57.5 NC_005808.1 + 11533 0.68 0.392446
Target:  5'- gGCCCugcgagcgGGCAUCCugauaggacugcCCGCCGG--UCAUCGa -3'
miRNA:   3'- -CGGG--------UCGUAGG------------GGCGGCUguAGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 40310 0.68 0.420206
Target:  5'- cCCCAGCAUCgaCCGCgCGGCAcuguacgcgaUgAUCGa -3'
miRNA:   3'- cGGGUCGUAGg-GGCG-GCUGU----------AgUAGC- -5'
26799 5' -57.5 NC_005808.1 + 22984 0.68 0.439359
Target:  5'- gGCCC-GCAUgaCCCCGgaCGGCAagAUCGa -3'
miRNA:   3'- -CGGGuCGUA--GGGGCg-GCUGUagUAGC- -5'
26799 5' -57.5 NC_005808.1 + 7787 0.67 0.465986
Target:  5'- cGCCCuGCgaggcgaugggcauGUCCCacuCGCUGAUAUgGUCGa -3'
miRNA:   3'- -CGGGuCG--------------UAGGG---GCGGCUGUAgUAGC- -5'
26799 5' -57.5 NC_005808.1 + 26995 0.67 0.479101
Target:  5'- -gUCAGCAUCCUgGCCGAUggCG-CGg -3'
miRNA:   3'- cgGGUCGUAGGGgCGGCUGuaGUaGC- -5'
26799 5' -57.5 NC_005808.1 + 24562 0.67 0.479101
Target:  5'- gGCCCccaAGCAg-CCCGCCGACAa----- -3'
miRNA:   3'- -CGGG---UCGUagGGGCGGCUGUaguagc -5'
26799 5' -57.5 NC_005808.1 + 6136 0.67 0.488286
Target:  5'- uGCCCuuccaucAGCA-CCCacuCGCCGcCGUCAUCu -3'
miRNA:   3'- -CGGG-------UCGUaGGG---GCGGCuGUAGUAGc -5'
26799 5' -57.5 NC_005808.1 + 4859 0.66 0.499623
Target:  5'- cGgCCAGCuuccaAUCCUCGCCGGCGagccacgcaaUCAUgCGu -3'
miRNA:   3'- -CgGGUCG-----UAGGGGCGGCUGU----------AGUA-GC- -5'
26799 5' -57.5 NC_005808.1 + 7114 0.66 0.499623
Target:  5'- uCCaCGGUuUCCCCGCUcACGUCcgCGa -3'
miRNA:   3'- cGG-GUCGuAGGGGCGGcUGUAGuaGC- -5'
26799 5' -57.5 NC_005808.1 + 7502 0.66 0.499623
Target:  5'- cGCCCAGCAggUUgCCGaggaUGGCGUUGUCu -3'
miRNA:   3'- -CGGGUCGU--AGgGGCg---GCUGUAGUAGc -5'
26799 5' -57.5 NC_005808.1 + 25509 0.66 0.499623
Target:  5'- gGCCCGGCcgagaaCCgCGCCGGCuUCGccuUCGu -3'
miRNA:   3'- -CGGGUCGua----GGgGCGGCUGuAGU---AGC- -5'
26799 5' -57.5 NC_005808.1 + 1274 0.66 0.51003
Target:  5'- aGCgCCGGUAUUCCCGgCCaGCGacccacuucucuUCAUCGa -3'
miRNA:   3'- -CG-GGUCGUAGGGGC-GGcUGU------------AGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 19035 0.66 0.51003
Target:  5'- cGCCC-GCA--CCUGCCGGCGaUGUCGg -3'
miRNA:   3'- -CGGGuCGUagGGGCGGCUGUaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 38263 0.66 0.541762
Target:  5'- cGgCCAGCAUCaagGCUGGCAcCAUCGu -3'
miRNA:   3'- -CgGGUCGUAGgggCGGCUGUaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 11092 0.66 0.552488
Target:  5'- gGCCCAGCAgca-CGCCGGCggCAa-- -3'
miRNA:   3'- -CGGGUCGUagggGCGGCUGuaGUagc -5'
26799 5' -57.5 NC_005808.1 + 11586 0.66 0.552488
Target:  5'- cGgCCGGCAagCCCGUgGACAg-GUCGc -3'
miRNA:   3'- -CgGGUCGUagGGGCGgCUGUagUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.