miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26799 5' -57.5 NC_005808.1 + 12291 0.74 0.178981
Target:  5'- gGCCCAGCGUgCCgGCuaCGGCggCGUCGa -3'
miRNA:   3'- -CGGGUCGUAgGGgCG--GCUGuaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 8180 0.66 0.499623
Target:  5'- cGCCCGGa--UgCUGCCGGCGauuUCAUCGc -3'
miRNA:   3'- -CGGGUCguaGgGGCGGCUGU---AGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 19037 0.67 0.489312
Target:  5'- aGCCCugguAGCGg--CCGCCGGCggCGUCGn -3'
miRNA:   3'- -CGGG----UCGUaggGGCGGCUGuaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 19966 0.67 0.478086
Target:  5'- aCCCAGguUUCgggcaggCCGCCGAUGUCcgCGu -3'
miRNA:   3'- cGGGUCguAGG-------GGCGGCUGUAGuaGC- -5'
26799 5' -57.5 NC_005808.1 + 26250 0.67 0.468996
Target:  5'- cGCCgaaGGCAcgggCaCCCGCCGGCcUgGUCGg -3'
miRNA:   3'- -CGGg--UCGUa---G-GGGCGGCUGuAgUAGC- -5'
26799 5' -57.5 NC_005808.1 + 33999 0.67 0.468996
Target:  5'- cGCCUAcGcCAUCCCCacggucGCCGugAcCGUCGu -3'
miRNA:   3'- -CGGGU-C-GUAGGGG------CGGCugUaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 41795 0.67 0.468996
Target:  5'- aGCCCAGCca-CCUGCUGACGg---CGa -3'
miRNA:   3'- -CGGGUCGuagGGGCGGCUGUaguaGC- -5'
26799 5' -57.5 NC_005808.1 + 24594 0.67 0.459001
Target:  5'- cGUCCGGCguGUCCuuGCCGGgGUaggucagcggcaCGUCGa -3'
miRNA:   3'- -CGGGUCG--UAGGggCGGCUgUA------------GUAGC- -5'
26799 5' -57.5 NC_005808.1 + 7768 0.68 0.42972
Target:  5'- aGCaCCGGCGcgaUCUgCGCCGGCGUCcacccuUCGc -3'
miRNA:   3'- -CG-GGUCGU---AGGgGCGGCUGUAGu-----AGC- -5'
26799 5' -57.5 NC_005808.1 + 11533 0.68 0.392446
Target:  5'- gGCCCugcgagcgGGCAUCCugauaggacugcCCGCCGG--UCAUCGa -3'
miRNA:   3'- -CGGG--------UCGUAGG------------GGCGGCUguAGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 15207 0.69 0.383461
Target:  5'- cGCCgauGGCgAUUUCCGCCGACAUCGa-- -3'
miRNA:   3'- -CGGg--UCG-UAGGGGCGGCUGUAGUagc -5'
26799 5' -57.5 NC_005808.1 + 5547 0.69 0.383461
Target:  5'- cGCCCAG-GUCgCCCGCC-ACggUAUCGa -3'
miRNA:   3'- -CGGGUCgUAG-GGGCGGcUGuaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 12628 0.69 0.38257
Target:  5'- cGCUCGGCAUCgCUGCUGcCGUCcuuuggcGUCGg -3'
miRNA:   3'- -CGGGUCGUAGgGGCGGCuGUAG-------UAGC- -5'
26799 5' -57.5 NC_005808.1 + 34431 0.69 0.374614
Target:  5'- -gCCAGCGccUUCCUggGCCG-CAUCAUCGa -3'
miRNA:   3'- cgGGUCGU--AGGGG--CGGCuGUAGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 19066 0.7 0.324495
Target:  5'- -aUCAGCguGUCCUCGCCGAgGUCAcgCGa -3'
miRNA:   3'- cgGGUCG--UAGGGGCGGCUgUAGUa-GC- -5'
26799 5' -57.5 NC_005808.1 + 25936 0.7 0.293951
Target:  5'- gGCCCAGCAugUCCCgCGCUuGACcuuguagccGUCGUCc -3'
miRNA:   3'- -CGGGUCGU--AGGG-GCGG-CUG---------UAGUAGc -5'
26799 5' -57.5 NC_005808.1 + 818 0.71 0.27954
Target:  5'- cGCCCAGC--CCuuGCCGAa--CGUCGg -3'
miRNA:   3'- -CGGGUCGuaGGggCGGCUguaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 17430 0.73 0.215827
Target:  5'- cGCCCuugAGCAguggCCCCGCCaGCAUCGa-- -3'
miRNA:   3'- -CGGG---UCGUa---GGGGCGGcUGUAGUagc -5'
26799 5' -57.5 NC_005808.1 + 35415 0.74 0.180927
Target:  5'- aGCCCAGCGUcgcCCCCGaauCCGACAagcgcccggcccuggUCAUCc -3'
miRNA:   3'- -CGGGUCGUA---GGGGC---GGCUGU---------------AGUAGc -5'
26799 5' -57.5 NC_005808.1 + 37977 1.09 0.000429
Target:  5'- gGCCCAGCAUCCCCGCCGACAUCAUCGc -3'
miRNA:   3'- -CGGGUCGUAGGGGCGGCUGUAGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.