miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26799 5' -57.5 NC_005808.1 + 37977 1.09 0.000429
Target:  5'- gGCCCAGCAUCCCCGCCGACAUCAUCGc -3'
miRNA:   3'- -CGGGUCGUAGGGGCGGCUGUAGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 10057 0.77 0.115047
Target:  5'- cGCCggcggCAGCAUCCUgGCCGGCAUCAcCa -3'
miRNA:   3'- -CGG-----GUCGUAGGGgCGGCUGUAGUaGc -5'
26799 5' -57.5 NC_005808.1 + 17027 0.75 0.1438
Target:  5'- aCCgCGGCGuacaacUCCgaCGCCGACAUCAUCGg -3'
miRNA:   3'- cGG-GUCGU------AGGg-GCGGCUGUAGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 27203 0.74 0.160524
Target:  5'- cGUCCGGCAUCUUCGCCGGCccgCAcgCGg -3'
miRNA:   3'- -CGGGUCGUAGGGGCGGCUGua-GUa-GC- -5'
26799 5' -57.5 NC_005808.1 + 12291 0.74 0.178981
Target:  5'- gGCCCAGCGUgCCgGCuaCGGCggCGUCGa -3'
miRNA:   3'- -CGGGUCGUAgGGgCG--GCUGuaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 35415 0.74 0.180927
Target:  5'- aGCCCAGCGUcgcCCCCGaauCCGACAagcgcccggcccuggUCAUCc -3'
miRNA:   3'- -CGGGUCGUA---GGGGC---GGCUGU---------------AGUAGc -5'
26799 5' -57.5 NC_005808.1 + 14361 0.73 0.204681
Target:  5'- aGCCUGGCGcaguccgaCCCGCgCGugGUCGUCGg -3'
miRNA:   3'- -CGGGUCGUag------GGGCG-GCugUAGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 5914 0.73 0.21019
Target:  5'- cGUCCGGCAUCUuuucgCCGCUGGCggCAUCc -3'
miRNA:   3'- -CGGGUCGUAGG-----GGCGGCUGuaGUAGc -5'
26799 5' -57.5 NC_005808.1 + 5105 0.73 0.215827
Target:  5'- gGCCCAGCGUCCggugCgGCUGGCGcCGUUGa -3'
miRNA:   3'- -CGGGUCGUAGG----GgCGGCUGUaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 19167 0.73 0.215827
Target:  5'- aUCC-GCAUCCCgGCCGGCGUCGc-- -3'
miRNA:   3'- cGGGuCGUAGGGgCGGCUGUAGUagc -5'
26799 5' -57.5 NC_005808.1 + 17430 0.73 0.215827
Target:  5'- cGCCCuugAGCAguggCCCCGCCaGCAUCGa-- -3'
miRNA:   3'- -CGGG---UCGUa---GGGGCGGcUGUAGUagc -5'
26799 5' -57.5 NC_005808.1 + 31328 0.72 0.245978
Target:  5'- gGCCgAGCGUCCCagCGCCGcagcGCAaacccUCAUCGc -3'
miRNA:   3'- -CGGgUCGUAGGG--GCGGC----UGU-----AGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 24934 0.72 0.252412
Target:  5'- cGCCCAGC----CCGCCGACG-CAUCa -3'
miRNA:   3'- -CGGGUCGuaggGGCGGCUGUaGUAGc -5'
26799 5' -57.5 NC_005808.1 + 6396 0.72 0.252412
Target:  5'- cGCCgCGGCGcCCUCGgUGAUGUCGUCGa -3'
miRNA:   3'- -CGG-GUCGUaGGGGCgGCUGUAGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 818 0.71 0.27954
Target:  5'- cGCCCAGC--CCuuGCCGAa--CGUCGg -3'
miRNA:   3'- -CGGGUCGuaGGggCGGCUguaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 25936 0.7 0.293951
Target:  5'- gGCCCAGCAugUCCCgCGCUuGACcuuguagccGUCGUCc -3'
miRNA:   3'- -CGGGUCGU--AGGG-GCGG-CUG---------UAGUAGc -5'
26799 5' -57.5 NC_005808.1 + 189 0.7 0.293951
Target:  5'- -gCCGGCGucaUCCCCGCCaucaGCAUCAUgGu -3'
miRNA:   3'- cgGGUCGU---AGGGGCGGc---UGUAGUAgC- -5'
26799 5' -57.5 NC_005808.1 + 27455 0.7 0.324495
Target:  5'- cGCCCugggcGCAUCCgCCGCCaGCAUgggGUCGg -3'
miRNA:   3'- -CGGGu----CGUAGG-GGCGGcUGUAg--UAGC- -5'
26799 5' -57.5 NC_005808.1 + 19066 0.7 0.324495
Target:  5'- -aUCAGCguGUCCUCGCCGAgGUCAcgCGa -3'
miRNA:   3'- cgGGUCG--UAGGGGCGGCUgUAGUa-GC- -5'
26799 5' -57.5 NC_005808.1 + 4304 0.69 0.340631
Target:  5'- cGCCCAuGUAggacagCuuGCCGGCGUCAUCc -3'
miRNA:   3'- -CGGGU-CGUag----GggCGGCUGUAGUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.