miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26799 5' -57.5 NC_005808.1 + 27746 0.69 0.340631
Target:  5'- cGCCCAGCGUgCggcgcuggCCGCCaACggCAUCGa -3'
miRNA:   3'- -CGGGUCGUAgG--------GGCGGcUGuaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 29430 0.69 0.365906
Target:  5'- cGCCCAGCGcggccgacaCUgGCCGACAUCGa-- -3'
miRNA:   3'- -CGGGUCGUag-------GGgCGGCUGUAGUagc -5'
26799 5' -57.5 NC_005808.1 + 34431 0.69 0.374614
Target:  5'- -gCCAGCGccUUCCUggGCCG-CAUCAUCGa -3'
miRNA:   3'- cgGGUCGU--AGGGG--CGGCuGUAGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 12628 0.69 0.38257
Target:  5'- cGCUCGGCAUCgCUGCUGcCGUCcuuuggcGUCGg -3'
miRNA:   3'- -CGGGUCGUAGgGGCGGCuGUAG-------UAGC- -5'
26799 5' -57.5 NC_005808.1 + 15207 0.69 0.383461
Target:  5'- cGCCgauGGCgAUUUCCGCCGACAUCGa-- -3'
miRNA:   3'- -CGGg--UCG-UAGGGGCGGCUGUAGUagc -5'
26799 5' -57.5 NC_005808.1 + 5547 0.69 0.383461
Target:  5'- cGCCCAG-GUCgCCCGCC-ACggUAUCGa -3'
miRNA:   3'- -CGGGUCgUAG-GGGCGGcUGuaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 11533 0.68 0.392446
Target:  5'- gGCCCugcgagcgGGCAUCCugauaggacugcCCGCCGG--UCAUCGa -3'
miRNA:   3'- -CGGG--------UCGUAGG------------GGCGGCUguAGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 40310 0.68 0.420206
Target:  5'- cCCCAGCAUCgaCCGCgCGGCAcuguacgcgaUgAUCGa -3'
miRNA:   3'- cGGGUCGUAGg-GGCG-GCUGU----------AgUAGC- -5'
26799 5' -57.5 NC_005808.1 + 7768 0.68 0.42972
Target:  5'- aGCaCCGGCGcgaUCUgCGCCGGCGUCcacccuUCGc -3'
miRNA:   3'- -CG-GGUCGU---AGGgGCGGCUGUAGu-----AGC- -5'
26799 5' -57.5 NC_005808.1 + 22984 0.68 0.439359
Target:  5'- gGCCC-GCAUgaCCCCGgaCGGCAagAUCGa -3'
miRNA:   3'- -CGGGuCGUA--GGGGCg-GCUGUagUAGC- -5'
26799 5' -57.5 NC_005808.1 + 24594 0.67 0.459001
Target:  5'- cGUCCGGCguGUCCuuGCCGGgGUaggucagcggcaCGUCGa -3'
miRNA:   3'- -CGGGUCG--UAGGggCGGCUgUA------------GUAGC- -5'
26799 5' -57.5 NC_005808.1 + 7787 0.67 0.465986
Target:  5'- cGCCCuGCgaggcgaugggcauGUCCCacuCGCUGAUAUgGUCGa -3'
miRNA:   3'- -CGGGuCG--------------UAGGG---GCGGCUGUAgUAGC- -5'
26799 5' -57.5 NC_005808.1 + 41795 0.67 0.468996
Target:  5'- aGCCCAGCca-CCUGCUGACGg---CGa -3'
miRNA:   3'- -CGGGUCGuagGGGCGGCUGUaguaGC- -5'
26799 5' -57.5 NC_005808.1 + 33999 0.67 0.468996
Target:  5'- cGCCUAcGcCAUCCCCacggucGCCGugAcCGUCGu -3'
miRNA:   3'- -CGGGU-C-GUAGGGG------CGGCugUaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 26250 0.67 0.468996
Target:  5'- cGCCgaaGGCAcgggCaCCCGCCGGCcUgGUCGg -3'
miRNA:   3'- -CGGg--UCGUa---G-GGGCGGCUGuAgUAGC- -5'
26799 5' -57.5 NC_005808.1 + 19966 0.67 0.478086
Target:  5'- aCCCAGguUUCgggcaggCCGCCGAUGUCcgCGu -3'
miRNA:   3'- cGGGUCguAGG-------GGCGGCUGUAGuaGC- -5'
26799 5' -57.5 NC_005808.1 + 24562 0.67 0.479101
Target:  5'- gGCCCccaAGCAg-CCCGCCGACAa----- -3'
miRNA:   3'- -CGGG---UCGUagGGGCGGCUGUaguagc -5'
26799 5' -57.5 NC_005808.1 + 26995 0.67 0.479101
Target:  5'- -gUCAGCAUCCUgGCCGAUggCG-CGg -3'
miRNA:   3'- cgGGUCGUAGGGgCGGCUGuaGUaGC- -5'
26799 5' -57.5 NC_005808.1 + 6136 0.67 0.488286
Target:  5'- uGCCCuuccaucAGCA-CCCacuCGCCGcCGUCAUCu -3'
miRNA:   3'- -CGGG-------UCGUaGGG---GCGGCuGUAGUAGc -5'
26799 5' -57.5 NC_005808.1 + 19037 0.67 0.489312
Target:  5'- aGCCCugguAGCGg--CCGCCGGCggCGUCGn -3'
miRNA:   3'- -CGGG----UCGUaggGGCGGCUGuaGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.