miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
268 3' -57.9 AC_000008.1 + 17107 0.65 0.478388
Target:  5'- gGCUGGagcccgAGGUCCGcgugcggccaaucaAGCAGgUGgCGCCg -3'
miRNA:   3'- -CGGCCa-----UUCAGGU--------------UCGUCgGCgGCGG- -5'
268 3' -57.9 AC_000008.1 + 19939 0.66 0.47122
Target:  5'- cGCacugGGUGuuGGUCgGAGCcuucuuGGCC-CCGCCa -3'
miRNA:   3'- -CGg---CCAU--UCAGgUUCG------UCGGcGGCGG- -5'
268 3' -57.9 AC_000008.1 + 28353 0.66 0.47122
Target:  5'- uGCCGGgaacguacGAGUgCGucacCGGCCGCUGCa -3'
miRNA:   3'- -CGGCCa-------UUCAgGUuc--GUCGGCGGCGg -5'
268 3' -57.9 AC_000008.1 + 7501 0.66 0.461077
Target:  5'- aGgCGGUAGGUgUGGuGCAGCgGCCGgUg -3'
miRNA:   3'- -CgGCCAUUCAgGUU-CGUCGgCGGCgG- -5'
268 3' -57.9 AC_000008.1 + 23538 0.66 0.461077
Target:  5'- gGCCGGacGGcuggCUcuGCAG-CGCCGCCc -3'
miRNA:   3'- -CGGCCauUCa---GGuuCGUCgGCGGCGG- -5'
268 3' -57.9 AC_000008.1 + 18779 0.66 0.451049
Target:  5'- cGCCGccaGAGgagcugCUGAGCcGCCGCgCGCCc -3'
miRNA:   3'- -CGGCca-UUCa-----GGUUCGuCGGCG-GCGG- -5'
268 3' -57.9 AC_000008.1 + 3769 0.66 0.441143
Target:  5'- cGCCGuugGAGaCU--GCAGCCuccGCCGCCg -3'
miRNA:   3'- -CGGCca-UUCaGGuuCGUCGG---CGGCGG- -5'
268 3' -57.9 AC_000008.1 + 4953 0.67 0.412185
Target:  5'- aCUGGUA-GUUaagagagcuGCAGCUGCCGUCa -3'
miRNA:   3'- cGGCCAUuCAGguu------CGUCGGCGGCGG- -5'
268 3' -57.9 AC_000008.1 + 26394 0.67 0.412185
Target:  5'- cGCCGucaccGAGaCCAuGC-GCCGUCGCCg -3'
miRNA:   3'- -CGGCca---UUCaGGUuCGuCGGCGGCGG- -5'
268 3' -57.9 AC_000008.1 + 9805 0.68 0.366631
Target:  5'- cGCCGGacuggGGGUCCAAGUAaacCCcCCGUCc -3'
miRNA:   3'- -CGGCCa----UUCAGGUUCGUc--GGcGGCGG- -5'
268 3' -57.9 AC_000008.1 + 15086 0.68 0.366631
Target:  5'- gGCgCGG-AAGagaacUCCAacgcGGCAGCCGCgGCa -3'
miRNA:   3'- -CG-GCCaUUC-----AGGU----UCGUCGGCGgCGg -5'
268 3' -57.9 AC_000008.1 + 22027 0.68 0.357085
Target:  5'- cGCUGGaaAAGUCCAcccaaagcguacAGgGGCCcaacucgGCCGCCu -3'
miRNA:   3'- -CGGCCa-UUCAGGU------------UCgUCGG-------CGGCGG- -5'
268 3' -57.9 AC_000008.1 + 22686 0.68 0.352804
Target:  5'- cGCCGGUuGGUCagCAGGUAGUUuaggguugccuccagGCUGCCc -3'
miRNA:   3'- -CGGCCAuUCAG--GUUCGUCGG---------------CGGCGG- -5'
268 3' -57.9 AC_000008.1 + 21645 0.68 0.335223
Target:  5'- -aCGGcGGGUCCAGGggagcauCGaagggagaacccagcGCCGCCGCCa -3'
miRNA:   3'- cgGCCaUUCAGGUUC-------GU---------------CGGCGGCGG- -5'
268 3' -57.9 AC_000008.1 + 17635 0.68 0.331948
Target:  5'- aGCCGGUcuuuguGGUUCuuGCAGauauggcccucacCUGCCGCCu -3'
miRNA:   3'- -CGGCCAu-----UCAGGuuCGUC-------------GGCGGCGG- -5'
268 3' -57.9 AC_000008.1 + 18093 0.68 0.324665
Target:  5'- cGCCGcGcaugcgacGGUgCGAcGCGcGCCGCCGCCg -3'
miRNA:   3'- -CGGC-Cau------UCAgGUU-CGU-CGGCGGCGG- -5'
268 3' -57.9 AC_000008.1 + 846 0.69 0.316713
Target:  5'- cCCGGc-AGcCCGAGCAGCCGgaGCa -3'
miRNA:   3'- cGGCCauUCaGGUUCGUCGGCggCGg -5'
268 3' -57.9 AC_000008.1 + 6476 0.69 0.316713
Target:  5'- cGCUcGUuGGUCCAgcagaGGCGGCCGCCcuuGCg -3'
miRNA:   3'- -CGGcCAuUCAGGU-----UCGUCGGCGG---CGg -5'
268 3' -57.9 AC_000008.1 + 20792 0.69 0.316713
Target:  5'- uGCCGcGUugGAGUUCucuuccGC-GCCGCUGCCa -3'
miRNA:   3'- -CGGC-CA--UUCAGGuu----CGuCGGCGGCGG- -5'
268 3' -57.9 AC_000008.1 + 25529 0.69 0.279162
Target:  5'- cGCUGGccccUCUAccgcCAGCCGCCGCCg -3'
miRNA:   3'- -CGGCCauucAGGUuc--GUCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.