miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26800 3' -55.5 NC_005808.1 + 340 0.69 0.410715
Target:  5'- cGGUGGCgucgcgcagcaGGCCguccgcCAGGCCCGAGAa -3'
miRNA:   3'- -CCGCUGaag--------CCGGa-----GUUCGGGUUCUg -5'
26800 3' -55.5 NC_005808.1 + 616 0.7 0.368419
Target:  5'- cGGCGAUgaUGGCCUC-AGCCUc-GGCg -3'
miRNA:   3'- -CCGCUGaaGCCGGAGuUCGGGuuCUG- -5'
26800 3' -55.5 NC_005808.1 + 637 0.69 0.433946
Target:  5'- cGGCGuc--CGGCgUCGAgucgguGCCCAAGGCu -3'
miRNA:   3'- -CCGCugaaGCCGgAGUU------CGGGUUCUG- -5'
26800 3' -55.5 NC_005808.1 + 688 0.77 0.130328
Target:  5'- cGGCGGCgcCGGCCgggccGCCCAAGAUa -3'
miRNA:   3'- -CCGCUGaaGCCGGaguu-CGGGUUCUG- -5'
26800 3' -55.5 NC_005808.1 + 1315 0.67 0.56
Target:  5'- gGGCGACggccaccaGGCCgaCAAGCgCGAGGa -3'
miRNA:   3'- -CCGCUGaag-----CCGGa-GUUCGgGUUCUg -5'
26800 3' -55.5 NC_005808.1 + 2487 0.67 0.538066
Target:  5'- aGGCGGuCUUUGaaUUCGAGCgCCGAGAUu -3'
miRNA:   3'- -CCGCU-GAAGCcgGAGUUCG-GGUUCUG- -5'
26800 3' -55.5 NC_005808.1 + 4047 0.67 0.571062
Target:  5'- cGCGGCgagCGGCaggcCAgcGGCCCAGGGg -3'
miRNA:   3'- cCGCUGaa-GCCGga--GU--UCGGGUUCUg -5'
26800 3' -55.5 NC_005808.1 + 4888 0.74 0.214921
Target:  5'- cGGCGACggCGGCCUCGuuuucGGCCaCGguGGAa -3'
miRNA:   3'- -CCGCUGaaGCCGGAGU-----UCGG-GU--UCUg -5'
26800 3' -55.5 NC_005808.1 + 4922 0.66 0.604523
Target:  5'- cGGCGACgacCaGCUUCuuGCCCucGGGCg -3'
miRNA:   3'- -CCGCUGaa-GcCGGAGuuCGGGu-UCUG- -5'
26800 3' -55.5 NC_005808.1 + 7247 0.7 0.395663
Target:  5'- cGGCGAUgUCGGCC----GCCCAGGuCu -3'
miRNA:   3'- -CCGCUGaAGCCGGaguuCGGGUUCuG- -5'
26800 3' -55.5 NC_005808.1 + 7447 0.69 0.411667
Target:  5'- -uCGGCUUCGGCCUUcgcgcgaauggccuuGCaCCAGGACu -3'
miRNA:   3'- ccGCUGAAGCCGGAGuu-------------CG-GGUUCUG- -5'
26800 3' -55.5 NC_005808.1 + 7685 0.69 0.424173
Target:  5'- uGGCGGCgaucugCGGCCgguAGCCCucGAa -3'
miRNA:   3'- -CCGCUGaa----GCCGGaguUCGGGuuCUg -5'
26800 3' -55.5 NC_005808.1 + 8134 0.66 0.615739
Target:  5'- cGGUGACUUCccaGCCcuugccguUCAcgucgaugaugcGGCCCAGGAa -3'
miRNA:   3'- -CCGCUGAAGc--CGG--------AGU------------UCGGGUUCUg -5'
26800 3' -55.5 NC_005808.1 + 8452 0.66 0.638205
Target:  5'- cGCGAUgUCGGCgUCGagguGGCCUgcGAUg -3'
miRNA:   3'- cCGCUGaAGCCGgAGU----UCGGGuuCUG- -5'
26800 3' -55.5 NC_005808.1 + 8818 0.7 0.363127
Target:  5'- aGGCGguACUuggugUCGGCCUugauaccguccucgcCGacguAGCCCAGGACg -3'
miRNA:   3'- -CCGC--UGA-----AGCCGGA---------------GU----UCGGGUUCUG- -5'
26800 3' -55.5 NC_005808.1 + 9481 0.72 0.310009
Target:  5'- cGGCGACaUUCagGGCCUUggGUUCAuGGGCg -3'
miRNA:   3'- -CCGCUG-AAG--CCGGAGuuCGGGU-UCUG- -5'
26800 3' -55.5 NC_005808.1 + 9756 0.67 0.56
Target:  5'- gGGCGcGCUUC-GCCUCgAAGUCCA-GAUc -3'
miRNA:   3'- -CCGC-UGAAGcCGGAG-UUCGGGUuCUG- -5'
26800 3' -55.5 NC_005808.1 + 10451 0.67 0.527209
Target:  5'- aGGuCGAgUUCGGCCUUGAGggauUCgGGGGCg -3'
miRNA:   3'- -CC-GCUgAAGCCGGAGUUC----GGgUUCUG- -5'
26800 3' -55.5 NC_005808.1 + 10765 0.71 0.341649
Target:  5'- -uCGACUUCGGCCcgCAguucuucGGCCUggGAUu -3'
miRNA:   3'- ccGCUGAAGCCGGa-GU-------UCGGGuuCUG- -5'
26800 3' -55.5 NC_005808.1 + 11575 0.79 0.100646
Target:  5'- cGCGAUUgccUCGGCCggCAAGCCCGuGGACa -3'
miRNA:   3'- cCGCUGA---AGCCGGa-GUUCGGGU-UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.