miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26800 3' -55.5 NC_005808.1 + 12475 0.8 0.084037
Target:  5'- cGGCGGCguguucuggcgCGGCCUCAucGCCUggGACa -3'
miRNA:   3'- -CCGCUGaa---------GCCGGAGUu-CGGGuuCUG- -5'
26800 3' -55.5 NC_005808.1 + 12786 0.72 0.302264
Target:  5'- uGGuCGACgauucaUCGGCaUCGAGCgCGAGACa -3'
miRNA:   3'- -CC-GCUGa-----AGCCGgAGUUCGgGUUCUG- -5'
26800 3' -55.5 NC_005808.1 + 12911 0.67 0.582175
Target:  5'- uGGCGAUgcgcUCGGCCgc--GCCCAuaACg -3'
miRNA:   3'- -CCGCUGa---AGCCGGaguuCGGGUucUG- -5'
26800 3' -55.5 NC_005808.1 + 14909 0.68 0.494107
Target:  5'- cGGCGAuCUgcugcuggcCGGCCUCAAgugccgacugcgcGCCCAAcucGGCg -3'
miRNA:   3'- -CCGCU-GAa--------GCCGGAGUU-------------CGGGUU---CUG- -5'
26800 3' -55.5 NC_005808.1 + 15328 0.74 0.214342
Target:  5'- cGGCGaACUgcgguucauugccUCGGCCaaGAGCCUggGGCg -3'
miRNA:   3'- -CCGC-UGA-------------AGCCGGagUUCGGGuuCUG- -5'
26800 3' -55.5 NC_005808.1 + 17836 0.67 0.5348
Target:  5'- gGGCGGgUUgaugcccgccaccgUGGCCUCGucGCCCAgguAGGCc -3'
miRNA:   3'- -CCGCUgAA--------------GCCGGAGUu-CGGGU---UCUG- -5'
26800 3' -55.5 NC_005808.1 + 18371 0.68 0.474294
Target:  5'- cGGCGGCgaggUUGGCCUUGccgauGGCgCCGGuGGCg -3'
miRNA:   3'- -CCGCUGa---AGCCGGAGU-----UCG-GGUU-CUG- -5'
26800 3' -55.5 NC_005808.1 + 18473 0.66 0.638205
Target:  5'- cGGCGGCgUCGGCCgauucGUCCAccguGAUg -3'
miRNA:   3'- -CCGCUGaAGCCGGaguu-CGGGUu---CUG- -5'
26800 3' -55.5 NC_005808.1 + 19048 0.69 0.433946
Target:  5'- cGGCGAUgUCGGCCg-AGGCCaucGACc -3'
miRNA:   3'- -CCGCUGaAGCCGGagUUCGGguuCUG- -5'
26800 3' -55.5 NC_005808.1 + 19223 0.68 0.49516
Target:  5'- cGGacaGGCUguugaagcgCGGCgUCAGGCCCAuGAa -3'
miRNA:   3'- -CCg--CUGAa--------GCCGgAGUUCGGGUuCUg -5'
26800 3' -55.5 NC_005808.1 + 20096 0.67 0.525047
Target:  5'- uGGCGACUUCGGaaaaggcGCCCAGcACa -3'
miRNA:   3'- -CCGCUGAAGCCggaguu-CGGGUUcUG- -5'
26800 3' -55.5 NC_005808.1 + 21276 0.69 0.432963
Target:  5'- cGGUGGC--CGGCaUCAAGCCCGAagugcucGACa -3'
miRNA:   3'- -CCGCUGaaGCCGgAGUUCGGGUU-------CUG- -5'
26800 3' -55.5 NC_005808.1 + 22417 0.66 0.638205
Target:  5'- gGGCGACgacaaGGCg--AAGCCgCAAGGCg -3'
miRNA:   3'- -CCGCUGaag--CCGgagUUCGG-GUUCUG- -5'
26800 3' -55.5 NC_005808.1 + 23215 0.7 0.386438
Target:  5'- cGGUGAaUUCGGCCUCGgccucGGCCaccGACc -3'
miRNA:   3'- -CCGCUgAAGCCGGAGU-----UCGGguuCUG- -5'
26800 3' -55.5 NC_005808.1 + 24751 0.68 0.483631
Target:  5'- gGGCGACga-GGCCacgguggcgggcaUCAAcccGCCCGAGGg -3'
miRNA:   3'- -CCGCUGaagCCGG-------------AGUU---CGGGUUCUg -5'
26800 3' -55.5 NC_005808.1 + 27141 0.68 0.49516
Target:  5'- cGGCaGCUUCGGCCaaGGGCgcgUCAAGAa -3'
miRNA:   3'- -CCGcUGAAGCCGGagUUCG---GGUUCUg -5'
26800 3' -55.5 NC_005808.1 + 27427 0.68 0.49516
Target:  5'- uGGCGcaccGCgcccggCGGCCgCAGGCCCu-GGCg -3'
miRNA:   3'- -CCGC----UGaa----GCCGGaGUUCGGGuuCUG- -5'
26800 3' -55.5 NC_005808.1 + 27839 0.66 0.626969
Target:  5'- cGGUGGCgcCGGCCgcgCcgcuGCUCAAGAa -3'
miRNA:   3'- -CCGCUGaaGCCGGa--Guu--CGGGUUCUg -5'
26800 3' -55.5 NC_005808.1 + 29056 0.67 0.531542
Target:  5'- cGGCGGCUcguaGGCCaucagcgggucauccUCGGGCgCCGAGGu -3'
miRNA:   3'- -CCGCUGAag--CCGG---------------AGUUCG-GGUUCUg -5'
26800 3' -55.5 NC_005808.1 + 30318 0.66 0.615739
Target:  5'- cGGCacGCUg-GGCCagCAAcccGCCCAGGACa -3'
miRNA:   3'- -CCGc-UGAagCCGGa-GUU---CGGGUUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.