Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26800 | 3' | -55.5 | NC_005808.1 | + | 35353 | 0.7 | 0.402204 |
Target: 5'- cGGCGACaUCGGCC-CGcGCCaguggccgaaguugCAGGGCu -3' miRNA: 3'- -CCGCUGaAGCCGGaGUuCGG--------------GUUCUG- -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 340 | 0.69 | 0.410715 |
Target: 5'- cGGUGGCgucgcgcagcaGGCCguccgcCAGGCCCGAGAa -3' miRNA: 3'- -CCGCUGaag--------CCGGa-----GUUCGGGUUCUg -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 7685 | 0.69 | 0.424173 |
Target: 5'- uGGCGGCgaucugCGGCCgguAGCCCucGAa -3' miRNA: 3'- -CCGCUGaa----GCCGGaguUCGGGuuCUg -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 637 | 0.69 | 0.433946 |
Target: 5'- cGGCGuc--CGGCgUCGAgucgguGCCCAAGGCu -3' miRNA: 3'- -CCGCugaaGCCGgAGUU------CGGGUUCUG- -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 18371 | 0.68 | 0.474294 |
Target: 5'- cGGCGGCgaggUUGGCCUUGccgauGGCgCCGGuGGCg -3' miRNA: 3'- -CCGCUGa---AGCCGGAGU-----UCG-GGUU-CUG- -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 14909 | 0.68 | 0.494107 |
Target: 5'- cGGCGAuCUgcugcuggcCGGCCUCAAgugccgacugcgcGCCCAAcucGGCg -3' miRNA: 3'- -CCGCU-GAa--------GCCGGAGUU-------------CGGGUU---CUG- -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 40584 | 0.69 | 0.447845 |
Target: 5'- cGCGACUUCgccagcgagcgccugGGCCUCAagaucAGCCacuGGCa -3' miRNA: 3'- cCGCUGAAG---------------CCGGAGU-----UCGGguuCUG- -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 24751 | 0.68 | 0.483631 |
Target: 5'- gGGCGACga-GGCCacgguggcgggcaUCAAcccGCCCGAGGg -3' miRNA: 3'- -CCGCUGaagCCGG-------------AGUU---CGGGUUCUg -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 27141 | 0.68 | 0.49516 |
Target: 5'- cGGCaGCUUCGGCCaaGGGCgcgUCAAGAa -3' miRNA: 3'- -CCGcUGAAGCCGGagUUCG---GGUUCUg -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 32980 | 0.68 | 0.504686 |
Target: 5'- cGCGACUUgaaGGCCcugaacgucgaacUCAcGCCCGAGGu -3' miRNA: 3'- cCGCUGAAg--CCGG-------------AGUuCGGGUUCUg -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 10451 | 0.67 | 0.527209 |
Target: 5'- aGGuCGAgUUCGGCCUUGAGggauUCgGGGGCg -3' miRNA: 3'- -CC-GCUgAAGCCGGAGUUC----GGgUUCUG- -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 41944 | 0.67 | 0.571062 |
Target: 5'- uGGUGGCUaCaGCCUUggGCaCCGAcucGACg -3' miRNA: 3'- -CCGCUGAaGcCGGAGuuCG-GGUU---CUG- -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 4047 | 0.67 | 0.571062 |
Target: 5'- cGCGGCgagCGGCaggcCAgcGGCCCAGGGg -3' miRNA: 3'- cCGCUGaa-GCCGga--GU--UCGGGUUCUg -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 31880 | 0.66 | 0.602282 |
Target: 5'- aGGCGACgacgcauucaagcaaUCGGCCg-AGGCCgugcgcgcugccguCAAGACg -3' miRNA: 3'- -CCGCUGa--------------AGCCGGagUUCGG--------------GUUCUG- -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 4922 | 0.66 | 0.604523 |
Target: 5'- cGGCGACgacCaGCUUCuuGCCCucGGGCg -3' miRNA: 3'- -CCGCUGaa-GcCGGAGuuCGGGu-UCUG- -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 8134 | 0.66 | 0.615739 |
Target: 5'- cGGUGACUUCccaGCCcuugccguUCAcgucgaugaugcGGCCCAGGAa -3' miRNA: 3'- -CCGCUGAAGc--CGG--------AGU------------UCGGGUUCUg -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 30318 | 0.66 | 0.615739 |
Target: 5'- cGGCacGCUg-GGCCagCAAcccGCCCAGGACa -3' miRNA: 3'- -CCGc-UGAagCCGGa-GUU---CGGGUUCUG- -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 22417 | 0.66 | 0.638205 |
Target: 5'- gGGCGACgacaaGGCg--AAGCCgCAAGGCg -3' miRNA: 3'- -CCGCUGaag--CCGgagUUCGG-GUUCUG- -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 8452 | 0.66 | 0.638205 |
Target: 5'- cGCGAUgUCGGCgUCGagguGGCCUgcGAUg -3' miRNA: 3'- cCGCUGaAGCCGgAGU----UCGGGuuCUG- -5' |
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26800 | 3' | -55.5 | NC_005808.1 | + | 19048 | 0.69 | 0.433946 |
Target: 5'- cGGCGAUgUCGGCCg-AGGCCaucGACc -3' miRNA: 3'- -CCGCUGaAGCCGGagUUCGGguuCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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