miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26800 3' -55.5 NC_005808.1 + 35353 0.7 0.402204
Target:  5'- cGGCGACaUCGGCC-CGcGCCaguggccgaaguugCAGGGCu -3'
miRNA:   3'- -CCGCUGaAGCCGGaGUuCGG--------------GUUCUG- -5'
26800 3' -55.5 NC_005808.1 + 340 0.69 0.410715
Target:  5'- cGGUGGCgucgcgcagcaGGCCguccgcCAGGCCCGAGAa -3'
miRNA:   3'- -CCGCUGaag--------CCGGa-----GUUCGGGUUCUg -5'
26800 3' -55.5 NC_005808.1 + 7685 0.69 0.424173
Target:  5'- uGGCGGCgaucugCGGCCgguAGCCCucGAa -3'
miRNA:   3'- -CCGCUGaa----GCCGGaguUCGGGuuCUg -5'
26800 3' -55.5 NC_005808.1 + 637 0.69 0.433946
Target:  5'- cGGCGuc--CGGCgUCGAgucgguGCCCAAGGCu -3'
miRNA:   3'- -CCGCugaaGCCGgAGUU------CGGGUUCUG- -5'
26800 3' -55.5 NC_005808.1 + 18371 0.68 0.474294
Target:  5'- cGGCGGCgaggUUGGCCUUGccgauGGCgCCGGuGGCg -3'
miRNA:   3'- -CCGCUGa---AGCCGGAGU-----UCG-GGUU-CUG- -5'
26800 3' -55.5 NC_005808.1 + 14909 0.68 0.494107
Target:  5'- cGGCGAuCUgcugcuggcCGGCCUCAAgugccgacugcgcGCCCAAcucGGCg -3'
miRNA:   3'- -CCGCU-GAa--------GCCGGAGUU-------------CGGGUU---CUG- -5'
26800 3' -55.5 NC_005808.1 + 8818 0.7 0.363127
Target:  5'- aGGCGguACUuggugUCGGCCUugauaccguccucgcCGacguAGCCCAGGACg -3'
miRNA:   3'- -CCGC--UGA-----AGCCGGA---------------GU----UCGGGUUCUG- -5'
26800 3' -55.5 NC_005808.1 + 616 0.7 0.368419
Target:  5'- cGGCGAUgaUGGCCUC-AGCCUc-GGCg -3'
miRNA:   3'- -CCGCUGaaGCCGGAGuUCGGGuuCUG- -5'
26800 3' -55.5 NC_005808.1 + 7447 0.69 0.411667
Target:  5'- -uCGGCUUCGGCCUUcgcgcgaauggccuuGCaCCAGGACu -3'
miRNA:   3'- ccGCUGAAGCCGGAGuu-------------CG-GGUUCUG- -5'
26800 3' -55.5 NC_005808.1 + 21276 0.69 0.432963
Target:  5'- cGGUGGC--CGGCaUCAAGCCCGAagugcucGACa -3'
miRNA:   3'- -CCGCUGaaGCCGgAGUUCGGGUU-------CUG- -5'
26800 3' -55.5 NC_005808.1 + 19048 0.69 0.433946
Target:  5'- cGGCGAUgUCGGCCg-AGGCCaucGACc -3'
miRNA:   3'- -CCGCUGaAGCCGGagUUCGGguuCUG- -5'
26800 3' -55.5 NC_005808.1 + 40584 0.69 0.447845
Target:  5'- cGCGACUUCgccagcgagcgccugGGCCUCAagaucAGCCacuGGCa -3'
miRNA:   3'- cCGCUGAAG---------------CCGGAGU-----UCGGguuCUG- -5'
26800 3' -55.5 NC_005808.1 + 34021 0.71 0.325949
Target:  5'- aGGcCGcACgcgCGGCCUaCGAcGCCCAGGAUg -3'
miRNA:   3'- -CC-GC-UGaa-GCCGGA-GUU-CGGGUUCUG- -5'
26800 3' -55.5 NC_005808.1 + 9481 0.72 0.310009
Target:  5'- cGGCGACaUUCagGGCCUUggGUUCAuGGGCg -3'
miRNA:   3'- -CCGCUG-AAG--CCGGAGuuCGGGU-UCUG- -5'
26800 3' -55.5 NC_005808.1 + 12786 0.72 0.302264
Target:  5'- uGGuCGACgauucaUCGGCaUCGAGCgCGAGACa -3'
miRNA:   3'- -CC-GCUGa-----AGCCGgAGUUCGgGUUCUG- -5'
26800 3' -55.5 NC_005808.1 + 36318 0.72 0.287223
Target:  5'- gGGCGACcugUUCGGCCU---GCCCAGcGCg -3'
miRNA:   3'- -CCGCUG---AAGCCGGAguuCGGGUUcUG- -5'
26800 3' -55.5 NC_005808.1 + 15328 0.74 0.214342
Target:  5'- cGGCGaACUgcgguucauugccUCGGCCaaGAGCCUggGGCg -3'
miRNA:   3'- -CCGC-UGA-------------AGCCGGagUUCGGGuuCUG- -5'
26800 3' -55.5 NC_005808.1 + 11575 0.79 0.100646
Target:  5'- cGCGAUUgccUCGGCCggCAAGCCCGuGGACa -3'
miRNA:   3'- cCGCUGA---AGCCGGa-GUUCGGGU-UCUG- -5'
26800 3' -55.5 NC_005808.1 + 12475 0.8 0.084037
Target:  5'- cGGCGGCguguucuggcgCGGCCUCAucGCCUggGACa -3'
miRNA:   3'- -CCGCUGaa---------GCCGGAGUu-CGGGuuCUG- -5'
26800 3' -55.5 NC_005808.1 + 8452 0.66 0.638205
Target:  5'- cGCGAUgUCGGCgUCGagguGGCCUgcGAUg -3'
miRNA:   3'- cCGCUGaAGCCGgAGU----UCGGGuuCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.