miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26801 3' -56.3 NC_005808.1 + 42093 0.66 0.584696
Target:  5'- cGCCUGCaaGCcGCCGCGgcgcaguaUGCUgcCGAGGCa -3'
miRNA:   3'- -UGGAUGc-UGaCGGCGU--------GCGA--GUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 41489 0.76 0.152258
Target:  5'- gGCCgaugcGCGACaUGCCGCGCGacacggcCAAGGCa -3'
miRNA:   3'- -UGGa----UGCUG-ACGGCGUGCga-----GUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 40626 0.69 0.3812
Target:  5'- cGCCUACaGCgugccuucccccaggGCCGCGCGCUCGAc-- -3'
miRNA:   3'- -UGGAUGcUGa--------------CGGCGUGCGAGUUccg -5'
26801 3' -56.3 NC_005808.1 + 40196 0.68 0.477147
Target:  5'- cACCUACGcUUGCCGCccugacaaggguACGCaCGcGGGCg -3'
miRNA:   3'- -UGGAUGCuGACGGCG------------UGCGaGU-UCCG- -5'
26801 3' -56.3 NC_005808.1 + 39197 0.71 0.305115
Target:  5'- cGCCUACGAaaaugGCCGCGugugggUGCUCAAGa- -3'
miRNA:   3'- -UGGAUGCUga---CGGCGU------GCGAGUUCcg -5'
26801 3' -56.3 NC_005808.1 + 38396 0.66 0.584696
Target:  5'- aGCC-GCGACgUGCuCGCGgccaacaugccCGCcaUCGAGGCg -3'
miRNA:   3'- -UGGaUGCUG-ACG-GCGU-----------GCG--AGUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 38188 1.1 0.000428
Target:  5'- gACCUACGACUGCCGCACGCUCAAGGCc -3'
miRNA:   3'- -UGGAUGCUGACGGCGUGCGAGUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 38099 0.72 0.248322
Target:  5'- cGCCUGUGGC-GCCGCGCGCaUCc-GGCg -3'
miRNA:   3'- -UGGAUGCUGaCGGCGUGCG-AGuuCCG- -5'
26801 3' -56.3 NC_005808.1 + 36843 0.68 0.436862
Target:  5'- gGCCcugGCGcacucGCUGCCcgGCGCGCU--GGGCg -3'
miRNA:   3'- -UGGa--UGC-----UGACGG--CGUGCGAguUCCG- -5'
26801 3' -56.3 NC_005808.1 + 36587 0.68 0.466899
Target:  5'- uGCCUAUccaGAacgGCaCGCACGCUUAcgccgagaAGGCa -3'
miRNA:   3'- -UGGAUG---CUga-CG-GCGUGCGAGU--------UCCG- -5'
26801 3' -56.3 NC_005808.1 + 36253 0.66 0.595806
Target:  5'- gGCCUuCGg--GCCGgGCGCUUuggcuGGGGCg -3'
miRNA:   3'- -UGGAuGCugaCGGCgUGCGAG-----UUCCG- -5'
26801 3' -56.3 NC_005808.1 + 35755 0.7 0.345408
Target:  5'- gGCCUACGAaaagGCCGU-CGC-CGAGGg -3'
miRNA:   3'- -UGGAUGCUga--CGGCGuGCGaGUUCCg -5'
26801 3' -56.3 NC_005808.1 + 35531 0.69 0.398605
Target:  5'- aGCCUguucaaACGAC-GCUGC-CGCcCGAGGCc -3'
miRNA:   3'- -UGGA------UGCUGaCGGCGuGCGaGUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 35242 0.73 0.211693
Target:  5'- gACgaACGAC-GCCGaggucgaggcCGCGCUCAAGGCc -3'
miRNA:   3'- -UGgaUGCUGaCGGC----------GUGCGAGUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 34481 0.71 0.312876
Target:  5'- aACCaACGcCgGCCGCGCGgUgCAGGGCc -3'
miRNA:   3'- -UGGaUGCuGaCGGCGUGCgA-GUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 34375 0.67 0.529928
Target:  5'- uGCUgACGGCcGCCGaccaGCGCgacuaCGAGGCc -3'
miRNA:   3'- -UGGaUGCUGaCGGCg---UGCGa----GUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 32923 0.66 0.551646
Target:  5'- gGCCUgcACGGCgGCUGUucgGC-CAGGGCg -3'
miRNA:   3'- -UGGA--UGCUGaCGGCGug-CGaGUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 31611 0.66 0.59247
Target:  5'- cCCUACcuGCUGCUuUACGCagcguggcagggccUCAAGGCa -3'
miRNA:   3'- uGGAUGc-UGACGGcGUGCG--------------AGUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 31360 0.7 0.328845
Target:  5'- uACCUGgaagaaGACgGCCGgaaGCuGCUCAAGGCg -3'
miRNA:   3'- -UGGAUg-----CUGaCGGCg--UG-CGAGUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 31179 0.68 0.456766
Target:  5'- gACCUGCacgccGGCUcGCCGC-UGCUCAAGa- -3'
miRNA:   3'- -UGGAUG-----CUGA-CGGCGuGCGAGUUCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.