miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26801 3' -56.3 NC_005808.1 + 36587 0.68 0.466899
Target:  5'- uGCCUAUccaGAacgGCaCGCACGCUUAcgccgagaAGGCa -3'
miRNA:   3'- -UGGAUG---CUga-CG-GCGUGCGAGU--------UCCG- -5'
26801 3' -56.3 NC_005808.1 + 4936 0.69 0.407967
Target:  5'- uGCCcGCGACgGuCUGCACGUcugCGAGGUu -3'
miRNA:   3'- -UGGaUGCUGaC-GGCGUGCGa--GUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 23504 0.69 0.417466
Target:  5'- gACCUGCGGCaguuccGCgaGCGCGCcuUCcAGGCg -3'
miRNA:   3'- -UGGAUGCUGa-----CGg-CGUGCG--AGuUCCG- -5'
26801 3' -56.3 NC_005808.1 + 8406 0.68 0.436862
Target:  5'- aGCCaguCGGCcaggGCCGUGCGCUUgucuacggccuuGAGGCu -3'
miRNA:   3'- -UGGau-GCUGa---CGGCGUGCGAG------------UUCCG- -5'
26801 3' -56.3 NC_005808.1 + 36843 0.68 0.436862
Target:  5'- gGCCcugGCGcacucGCUGCCcgGCGCGCU--GGGCg -3'
miRNA:   3'- -UGGa--UGC-----UGACGG--CGUGCGAguUCCG- -5'
26801 3' -56.3 NC_005808.1 + 27688 0.68 0.446752
Target:  5'- gUCUugGAauacagGCCGCGCGCcggCAGcGGCu -3'
miRNA:   3'- uGGAugCUga----CGGCGUGCGa--GUU-CCG- -5'
26801 3' -56.3 NC_005808.1 + 29759 0.68 0.446752
Target:  5'- gGCCU-CGGCUGCUGCcagGCGCgugcgCGAgauuucGGCa -3'
miRNA:   3'- -UGGAuGCUGACGGCG---UGCGa----GUU------CCG- -5'
26801 3' -56.3 NC_005808.1 + 4025 0.68 0.456766
Target:  5'- cACCaGCGucaUGCCGCGCgGgUCGAGcGCa -3'
miRNA:   3'- -UGGaUGCug-ACGGCGUG-CgAGUUC-CG- -5'
26801 3' -56.3 NC_005808.1 + 4631 0.68 0.466899
Target:  5'- gGCCcGCG-CUGCCGCAgGgUC--GGCa -3'
miRNA:   3'- -UGGaUGCuGACGGCGUgCgAGuuCCG- -5'
26801 3' -56.3 NC_005808.1 + 35531 0.69 0.398605
Target:  5'- aGCCUguucaaACGAC-GCUGC-CGCcCGAGGCc -3'
miRNA:   3'- -UGGA------UGCUGaCGGCGuGCGaGUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 40626 0.69 0.3812
Target:  5'- cGCCUACaGCgugccuucccccaggGCCGCGCGCUCGAc-- -3'
miRNA:   3'- -UGGAUGcUGa--------------CGGCGUGCGAGUUccg -5'
26801 3' -56.3 NC_005808.1 + 26338 0.7 0.353912
Target:  5'- cACC-GCGAacugGCCGCGcCGCUCGuaucGGCa -3'
miRNA:   3'- -UGGaUGCUga--CGGCGU-GCGAGUu---CCG- -5'
26801 3' -56.3 NC_005808.1 + 14846 0.77 0.128593
Target:  5'- uGCCguugGCGGCcagcGCCGCACGCU--GGGCg -3'
miRNA:   3'- -UGGa---UGCUGa---CGGCGUGCGAguUCCG- -5'
26801 3' -56.3 NC_005808.1 + 24163 0.75 0.156568
Target:  5'- cGCCU-CGACgGCUGCGCGCUUc-GGCg -3'
miRNA:   3'- -UGGAuGCUGaCGGCGUGCGAGuuCCG- -5'
26801 3' -56.3 NC_005808.1 + 35242 0.73 0.211693
Target:  5'- gACgaACGAC-GCCGaggucgaggcCGCGCUCAAGGCc -3'
miRNA:   3'- -UGgaUGCUGaCGGC----------GUGCGAGUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 38099 0.72 0.248322
Target:  5'- cGCCUGUGGC-GCCGCGCGCaUCc-GGCg -3'
miRNA:   3'- -UGGAUGCUGaCGGCGUGCG-AGuuCCG- -5'
26801 3' -56.3 NC_005808.1 + 16137 0.71 0.289299
Target:  5'- gACgUAgGACUgcgGCCGCACGCUgAuggugguGGGCg -3'
miRNA:   3'- -UGgAUgCUGA---CGGCGUGCGAgU-------UCCG- -5'
26801 3' -56.3 NC_005808.1 + 29103 0.71 0.305115
Target:  5'- gGCCcgUGCGggacuuGCUGCCGguCACGCgcgCGAGGCc -3'
miRNA:   3'- -UGG--AUGC------UGACGGC--GUGCGa--GUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 39197 0.71 0.305115
Target:  5'- cGCCUACGAaaaugGCCGCGugugggUGCUCAAGa- -3'
miRNA:   3'- -UGGAUGCUga---CGGCGU------GCGAGUUCcg -5'
26801 3' -56.3 NC_005808.1 + 31360 0.7 0.328845
Target:  5'- uACCUGgaagaaGACgGCCGgaaGCuGCUCAAGGCg -3'
miRNA:   3'- -UGGAUg-----CUGaCGGCg--UG-CGAGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.