miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26801 3' -56.3 NC_005808.1 + 15167 0.79 0.083557
Target:  5'- gGCCUGCGGCcGCCGgGCGCggugCGccAGGCg -3'
miRNA:   3'- -UGGAUGCUGaCGGCgUGCGa---GU--UCCG- -5'
26801 3' -56.3 NC_005808.1 + 7155 0.69 0.389381
Target:  5'- gGCCUggAUGACcaggGCCGgGCGCUUgucggauucgGGGGCg -3'
miRNA:   3'- -UGGA--UGCUGa---CGGCgUGCGAG----------UUCCG- -5'
26801 3' -56.3 NC_005808.1 + 26326 0.69 0.407967
Target:  5'- aGCCUucCGGgUgGCCGCGCGC--GAGGCc -3'
miRNA:   3'- -UGGAu-GCUgA-CGGCGUGCGagUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 29213 0.66 0.595806
Target:  5'- cGCCUACaa---CCGCGCGCU--GGGCa -3'
miRNA:   3'- -UGGAUGcugacGGCGUGCGAguUCCG- -5'
26801 3' -56.3 NC_005808.1 + 19981 0.74 0.17981
Target:  5'- -aCUACcuGCUGCCGCGCGCg--GGGCg -3'
miRNA:   3'- ugGAUGc-UGACGGCGUGCGaguUCCG- -5'
26801 3' -56.3 NC_005808.1 + 19416 0.74 0.184811
Target:  5'- gACCUGCuGCUGUCGCACcaGCagGGGGCc -3'
miRNA:   3'- -UGGAUGcUGACGGCGUG--CGagUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 7715 0.73 0.223356
Target:  5'- uGCCgAUGaACUGCagCGCACGCUCGGcGGCc -3'
miRNA:   3'- -UGGaUGC-UGACG--GCGUGCGAGUU-CCG- -5'
26801 3' -56.3 NC_005808.1 + 19499 0.73 0.241871
Target:  5'- cGCCguggGCG-CcGCCGUugGCgUCGGGGCg -3'
miRNA:   3'- -UGGa---UGCuGaCGGCGugCG-AGUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 19896 0.71 0.320786
Target:  5'- aACCgaGCGcaaACUGCUGCuuucGCGCUgGGGGCa -3'
miRNA:   3'- -UGGa-UGC---UGACGGCG----UGCGAgUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 18408 0.69 0.383914
Target:  5'- cGCCUACGuGCUcgcgcucauggacacGCCgaaGCGCGCagccgUCGAGGCg -3'
miRNA:   3'- -UGGAUGC-UGA---------------CGG---CGUGCG-----AGUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 21991 0.7 0.353912
Target:  5'- gACCUGCGAC-GCCGcCugGCg-AAGGa -3'
miRNA:   3'- -UGGAUGCUGaCGGC-GugCGagUUCCg -5'
26801 3' -56.3 NC_005808.1 + 24963 0.71 0.319192
Target:  5'- gGCCgu--ACUGCCGCACGaugcggcaaacaUCGAGGCc -3'
miRNA:   3'- -UGGaugcUGACGGCGUGCg-----------AGUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 18856 0.77 0.124996
Target:  5'- cGCCggcaugGCG-CUGCUGCGCGCcacCGAGGCa -3'
miRNA:   3'- -UGGa-----UGCuGACGGCGUGCGa--GUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 19178 0.69 0.371358
Target:  5'- gGCCgGCGucgcACUGaCCgGCGCGCUCAucaAGGUa -3'
miRNA:   3'- -UGGaUGC----UGAC-GG-CGUGCGAGU---UCCG- -5'
26801 3' -56.3 NC_005808.1 + 41489 0.76 0.152258
Target:  5'- gGCCgaugcGCGACaUGCCGCGCGacacggcCAAGGCa -3'
miRNA:   3'- -UGGa----UGCUG-ACGGCGUGCga-----GUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 34481 0.71 0.312876
Target:  5'- aACCaACGcCgGCCGCGCGgUgCAGGGCc -3'
miRNA:   3'- -UGGaUGCuGaCGGCGUGCgA-GUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 13909 0.69 0.380298
Target:  5'- gACCUugugaACGACgugGCgCGcCGCGCUggCGAGGCc -3'
miRNA:   3'- -UGGA-----UGCUGa--CG-GC-GUGCGA--GUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 5286 0.69 0.407967
Target:  5'- aGCgU-CGAUUGCUGCAUGUcuggcaggUCGAGGCc -3'
miRNA:   3'- -UGgAuGCUGACGGCGUGCG--------AGUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 17294 0.75 0.170166
Target:  5'- cGCCggugGCagGGCcgGCCGCACGacCUCAAGGCa -3'
miRNA:   3'- -UGGa---UG--CUGa-CGGCGUGC--GAGUUCCG- -5'
26801 3' -56.3 NC_005808.1 + 26527 0.74 0.184811
Target:  5'- cAUCUACGGC-GCCGCGCGCggc-GGCc -3'
miRNA:   3'- -UGGAUGCUGaCGGCGUGCGaguuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.