miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26801 5' -62.8 NC_005808.1 + 27451 0.68 0.205911
Target:  5'- cCGuCGcCCUGG--GCGCAUCCGCCgccaGCa -3'
miRNA:   3'- -GCcGC-GGACCgaCGCGUAGGCGGa---CG- -5'
26801 5' -62.8 NC_005808.1 + 27418 0.68 0.195461
Target:  5'- uCGcGCGCCUGGCgcaccGCGCccggCgGCCgcagGCc -3'
miRNA:   3'- -GC-CGCGGACCGa----CGCGua--GgCGGa---CG- -5'
26801 5' -62.8 NC_005808.1 + 27005 0.66 0.27229
Target:  5'- uGGCcgaUGGCgcgGUGCAUCCGCa-GCg -3'
miRNA:   3'- gCCGcggACCGa--CGCGUAGGCGgaCG- -5'
26801 5' -62.8 NC_005808.1 + 24363 0.66 0.286062
Target:  5'- uCGG-GUCgagGGCUucGCGCAUUCGCCaccacaacucgcUGCg -3'
miRNA:   3'- -GCCgCGGa--CCGA--CGCGUAGGCGG------------ACG- -5'
26801 5' -62.8 NC_005808.1 + 24161 0.69 0.158184
Target:  5'- -aGCGCCUcgacGGCUGCGCGcuUCgGCgUGUc -3'
miRNA:   3'- gcCGCGGA----CCGACGCGU--AGgCGgACG- -5'
26801 5' -62.8 NC_005808.1 + 23992 0.7 0.142058
Target:  5'- uCGGCGCacagaCUGGCgaagguggGCGCGUCgGCCa-- -3'
miRNA:   3'- -GCCGCG-----GACCGa-------CGCGUAGgCGGacg -5'
26801 5' -62.8 NC_005808.1 + 23947 0.66 0.259054
Target:  5'- aGGCGCCgcccGGCgagGUcgGCAUuuGCCgauucaUGCg -3'
miRNA:   3'- gCCGCGGa---CCGa--CG--CGUAggCGG------ACG- -5'
26801 5' -62.8 NC_005808.1 + 22995 0.68 0.200627
Target:  5'- uCGGCuuucGCCUGGUcggccUGCuGC-UgCGCCUGCu -3'
miRNA:   3'- -GCCG----CGGACCG-----ACG-CGuAgGCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 22235 0.7 0.149522
Target:  5'- gCGGC-CCUGGUUgucggccgcgaugGCGUAUUCGCCgGCc -3'
miRNA:   3'- -GCCGcGGACCGA-------------CGCGUAGGCGGaCG- -5'
26801 5' -62.8 NC_005808.1 + 22011 0.66 0.288175
Target:  5'- uCGGCGCCUGGCucgaaauagaccgacUuccacgccauguuGCGguCGUCgCGCUUGCu -3'
miRNA:   3'- -GCCGCGGACCG---------------A-------------CGC--GUAG-GCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 21190 0.67 0.22249
Target:  5'- gCGGCcuGCugCUGGuCUGCGCGU-UGCUUGCg -3'
miRNA:   3'- -GCCG--CG--GACC-GACGCGUAgGCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 20748 0.67 0.228265
Target:  5'- uGGCGCCguagagGcGCUGCGCcgcgcucgacucAUCgCGCggCUGCa -3'
miRNA:   3'- gCCGCGGa-----C-CGACGCG------------UAG-GCG--GACG- -5'
26801 5' -62.8 NC_005808.1 + 20617 0.67 0.234165
Target:  5'- gCGGCGUCgcaGGUcG-GUGUCgGCCUGCg -3'
miRNA:   3'- -GCCGCGGa--CCGaCgCGUAGgCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 18940 0.72 0.09416
Target:  5'- gGGuCGCCUGGUgcaguUGCuGCcgCCGCCgGCu -3'
miRNA:   3'- gCC-GCGGACCG-----ACG-CGuaGGCGGaCG- -5'
26801 5' -62.8 NC_005808.1 + 18864 0.66 0.286062
Target:  5'- uGGCGCU--GCUGCGCG-CCaCCgagGCa -3'
miRNA:   3'- gCCGCGGacCGACGCGUaGGcGGa--CG- -5'
26801 5' -62.8 NC_005808.1 + 18455 0.67 0.216841
Target:  5'- aGGCGCUgGGCcagGCGCGcagCCGgCUGg -3'
miRNA:   3'- gCCGCGGaCCGa--CGCGUa--GGCgGACg -5'
26801 5' -62.8 NC_005808.1 + 18064 0.66 0.286062
Target:  5'- cCGGCGCg-GGgUGCGUgcugggCCGCCgaagccgGCg -3'
miRNA:   3'- -GCCGCGgaCCgACGCGua----GGCGGa------CG- -5'
26801 5' -62.8 NC_005808.1 + 17513 0.69 0.158184
Target:  5'- aCGGCGCCgGGC-GCGC-UgCGCUgggugGCg -3'
miRNA:   3'- -GCCGCGGaCCGaCGCGuAgGCGGa----CG- -5'
26801 5' -62.8 NC_005808.1 + 17294 0.76 0.050703
Target:  5'- cCGGCGCCgcgGGC-GCGCAUCCauuCCgGCa -3'
miRNA:   3'- -GCCGCGGa--CCGaCGCGUAGGc--GGaCG- -5'
26801 5' -62.8 NC_005808.1 + 16454 0.66 0.27229
Target:  5'- aCGGCGagccGCUGCGCcaaAUCUGCC-GCg -3'
miRNA:   3'- -GCCGCggacCGACGCG---UAGGCGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.