Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 42423 | 0.82 | 0.017016 |
Target: 5'- aCGGUGCCcaGCgacaccgggGCGCAUCCGCCUGCg -3' miRNA: 3'- -GCCGCGGacCGa--------CGCGUAGGCGGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 27743 | 0.68 | 0.211316 |
Target: 5'- aGGCGCCcagcGuGCgGCGCuggCCGCCaacgGCa -3' miRNA: 3'- gCCGCGGa---C-CGaCGCGua-GGCGGa---CG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 42246 | 0.67 | 0.234165 |
Target: 5'- uCGG-GCCUGGCggacggccugcUGCGCGacgccaCCGCCaGCc -3' miRNA: 3'- -GCCgCGGACCG-----------ACGCGUa-----GGCGGaCG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 10110 | 0.66 | 0.293153 |
Target: 5'- uCGGC-CUUGGauucggGCGCAUCgGCC-GCc -3' miRNA: 3'- -GCCGcGGACCga----CGCGUAGgCGGaCG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 27853 | 0.72 | 0.09681 |
Target: 5'- uGcGCGCCaauGCUGCGCGUaCUGCCUGg -3' miRNA: 3'- gC-CGCGGac-CGACGCGUA-GGCGGACg -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 41913 | 0.72 | 0.102321 |
Target: 5'- gGGCGCCcGGCcgGCGCcgCCGUagGCg -3' miRNA: 3'- gCCGCGGaCCGa-CGCGuaGGCGgaCG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 15141 | 0.71 | 0.12745 |
Target: 5'- gCGGCGCgCUGGCauaccaGCGCcaggGCCUGCg -3' miRNA: 3'- -GCCGCG-GACCGa-----CGCGuaggCGGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 16144 | 0.71 | 0.12745 |
Target: 5'- aCGGaUGCCgaGGUcgaGCGCAUCCGCgaaCUGCa -3' miRNA: 3'- -GCC-GCGGa-CCGa--CGCGUAGGCG---GACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 17513 | 0.69 | 0.158184 |
Target: 5'- aCGGCGCCgGGC-GCGC-UgCGCUgggugGCg -3' miRNA: 3'- -GCCGCGGaCCGaCGCGuAgGCGGa----CG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 27451 | 0.68 | 0.205911 |
Target: 5'- cCGuCGcCCUGG--GCGCAUCCGCCgccaGCa -3' miRNA: 3'- -GCcGC-GGACCgaCGCGUAGGCGGa---CG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 13016 | 0.68 | 0.185477 |
Target: 5'- cCGcGCGCCUGG--GCGCggCCGaCCUGa -3' miRNA: 3'- -GC-CGCGGACCgaCGCGuaGGC-GGACg -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 28763 | 0.7 | 0.142058 |
Target: 5'- aGGCGCaauuGCUGgGCAaaUCCGCCgagugGCa -3' miRNA: 3'- gCCGCGgac-CGACgCGU--AGGCGGa----CG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 5337 | 0.78 | 0.035891 |
Target: 5'- uGGCGCagcaUGGCaucgcgcUGCGUggCCGCCUGCa -3' miRNA: 3'- gCCGCGg---ACCG-------ACGCGuaGGCGGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 13792 | 0.68 | 0.188919 |
Target: 5'- aCGGCGCgCUGGCUGCucaagaucgGCAaCCagggcaagcgcgacGCCgUGCg -3' miRNA: 3'- -GCCGCG-GACCGACG---------CGUaGG--------------CGG-ACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 13379 | 0.73 | 0.081914 |
Target: 5'- uCGGCGgaCUGGaCgccaugcGCGCGUCCGaCCUGCc -3' miRNA: 3'- -GCCGCg-GACC-Ga------CGCGUAGGC-GGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 33566 | 0.7 | 0.138268 |
Target: 5'- uCGGCuuuacGUCUGGUgacgaacugGUGCG-CCGCCUGCu -3' miRNA: 3'- -GCCG-----CGGACCGa--------CGCGUaGGCGGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 3700 | 0.68 | 0.195461 |
Target: 5'- aCGGCGacgcgCUGccccauGCgGCGCAUCCGCUcaUGCu -3' miRNA: 3'- -GCCGCg----GAC------CGaCGCGUAGGCGG--ACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 18455 | 0.67 | 0.216841 |
Target: 5'- aGGCGCUgGGCcagGCGCGcagCCGgCUGg -3' miRNA: 3'- gCCGCGGaCCGa--CGCGUa--GGCgGACg -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 18940 | 0.72 | 0.09416 |
Target: 5'- gGGuCGCCUGGUgcaguUGCuGCcgCCGCCgGCu -3' miRNA: 3'- gCC-GCGGACCG-----ACG-CGuaGGCGGaCG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 10059 | 0.71 | 0.113929 |
Target: 5'- cCGGCGgcagcauCCUGGCcG-GCAUCaccaGCCUGCa -3' miRNA: 3'- -GCCGC-------GGACCGaCgCGUAGg---CGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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