miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26801 5' -62.8 NC_005808.1 + 38097 0.67 0.240192
Target:  5'- -aGCGCCugUGGCgccgcGCGCAUCCGgCgGUu -3'
miRNA:   3'- gcCGCGG--ACCGa----CGCGUAGGCgGaCG- -5'
26801 5' -62.8 NC_005808.1 + 42246 0.67 0.234165
Target:  5'- uCGG-GCCUGGCggacggccugcUGCGCGacgccaCCGCCaGCc -3'
miRNA:   3'- -GCCgCGGACCG-----------ACGCGUa-----GGCGGaCG- -5'
26801 5' -62.8 NC_005808.1 + 20617 0.67 0.234165
Target:  5'- gCGGCGUCgcaGGUcG-GUGUCgGCCUGCg -3'
miRNA:   3'- -GCCGCGGa--CCGaCgCGUAGgCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 8601 0.67 0.234165
Target:  5'- nGGUGCuggauaagCUGGUUGCGCuucUCgGCCgcUGCg -3'
miRNA:   3'- gCCGCG--------GACCGACGCGu--AGgCGG--ACG- -5'
26801 5' -62.8 NC_005808.1 + 2341 0.67 0.228265
Target:  5'- -aGUGCgUGGC-GCGCGUgCGCC-GCa -3'
miRNA:   3'- gcCGCGgACCGaCGCGUAgGCGGaCG- -5'
26801 5' -62.8 NC_005808.1 + 20748 0.67 0.228265
Target:  5'- uGGCGCCguagagGcGCUGCGCcgcgcucgacucAUCgCGCggCUGCa -3'
miRNA:   3'- gCCGCGGa-----C-CGACGCG------------UAG-GCG--GACG- -5'
26801 5' -62.8 NC_005808.1 + 27842 0.67 0.22249
Target:  5'- uGGCGCC-GGCcGCGCcgCUGCUc-- -3'
miRNA:   3'- gCCGCGGaCCGaCGCGuaGGCGGacg -5'
26801 5' -62.8 NC_005808.1 + 14401 0.67 0.22249
Target:  5'- aGGCGUagcgaaGCUGgGCGUCgccaggcgCGCCUGCg -3'
miRNA:   3'- gCCGCGgac---CGACgCGUAG--------GCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 21190 0.67 0.22249
Target:  5'- gCGGCcuGCugCUGGuCUGCGCGU-UGCUUGCg -3'
miRNA:   3'- -GCCG--CG--GACC-GACGCGUAgGCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 18455 0.67 0.216841
Target:  5'- aGGCGCUgGGCcagGCGCGcagCCGgCUGg -3'
miRNA:   3'- gCCGCGGaCCGa--CGCGUa--GGCgGACg -5'
26801 5' -62.8 NC_005808.1 + 2243 0.67 0.216841
Target:  5'- gCGGCGCgUGGCcGCGCAaugaaUCUuCUUGUc -3'
miRNA:   3'- -GCCGCGgACCGaCGCGU-----AGGcGGACG- -5'
26801 5' -62.8 NC_005808.1 + 39071 0.67 0.216841
Target:  5'- gCGGUGUgcGGCUGUaugucuauaaGUGUCCGCaCUGCa -3'
miRNA:   3'- -GCCGCGgaCCGACG----------CGUAGGCG-GACG- -5'
26801 5' -62.8 NC_005808.1 + 1647 0.68 0.211316
Target:  5'- uCGGgGUa-GGuCUGCGCGUCCuGUUUGCg -3'
miRNA:   3'- -GCCgCGgaCC-GACGCGUAGG-CGGACG- -5'
26801 5' -62.8 NC_005808.1 + 27743 0.68 0.211316
Target:  5'- aGGCGCCcagcGuGCgGCGCuggCCGCCaacgGCa -3'
miRNA:   3'- gCCGCGGa---C-CGaCGCGua-GGCGGa---CG- -5'
26801 5' -62.8 NC_005808.1 + 27451 0.68 0.205911
Target:  5'- cCGuCGcCCUGG--GCGCAUCCGCCgccaGCa -3'
miRNA:   3'- -GCcGC-GGACCgaCGCGUAGGCGGa---CG- -5'
26801 5' -62.8 NC_005808.1 + 14360 0.68 0.200627
Target:  5'- gCGGUGuCCUGGaaggcggGgGCAUCCGCgCcGCg -3'
miRNA:   3'- -GCCGC-GGACCga-----CgCGUAGGCG-GaCG- -5'
26801 5' -62.8 NC_005808.1 + 22995 0.68 0.200627
Target:  5'- uCGGCuuucGCCUGGUcggccUGCuGC-UgCGCCUGCu -3'
miRNA:   3'- -GCCG----CGGACCG-----ACG-CGuAgGCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 27418 0.68 0.195461
Target:  5'- uCGcGCGCCUGGCgcaccGCGCccggCgGCCgcagGCc -3'
miRNA:   3'- -GC-CGCGGACCGa----CGCGua--GgCGGa---CG- -5'
26801 5' -62.8 NC_005808.1 + 3700 0.68 0.195461
Target:  5'- aCGGCGacgcgCUGccccauGCgGCGCAUCCGCUcaUGCu -3'
miRNA:   3'- -GCCGCg----GAC------CGaCGCGUAGGCGG--ACG- -5'
26801 5' -62.8 NC_005808.1 + 13792 0.68 0.188919
Target:  5'- aCGGCGCgCUGGCUGCucaagaucgGCAaCCagggcaagcgcgacGCCgUGCg -3'
miRNA:   3'- -GCCGCG-GACCGACG---------CGUaGG--------------CGG-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.