Results 21 - 40 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 38097 | 0.67 | 0.240192 |
Target: 5'- -aGCGCCugUGGCgccgcGCGCAUCCGgCgGUu -3' miRNA: 3'- gcCGCGG--ACCGa----CGCGUAGGCgGaCG- -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 8601 | 0.67 | 0.234165 |
Target: 5'- nGGUGCuggauaagCUGGUUGCGCuucUCgGCCgcUGCg -3' miRNA: 3'- gCCGCG--------GACCGACGCGu--AGgCGG--ACG- -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 20617 | 0.67 | 0.234165 |
Target: 5'- gCGGCGUCgcaGGUcG-GUGUCgGCCUGCg -3' miRNA: 3'- -GCCGCGGa--CCGaCgCGUAGgCGGACG- -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 42246 | 0.67 | 0.234165 |
Target: 5'- uCGG-GCCUGGCggacggccugcUGCGCGacgccaCCGCCaGCc -3' miRNA: 3'- -GCCgCGGACCG-----------ACGCGUa-----GGCGGaCG- -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 20748 | 0.67 | 0.228265 |
Target: 5'- uGGCGCCguagagGcGCUGCGCcgcgcucgacucAUCgCGCggCUGCa -3' miRNA: 3'- gCCGCGGa-----C-CGACGCG------------UAG-GCG--GACG- -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 2341 | 0.67 | 0.228265 |
Target: 5'- -aGUGCgUGGC-GCGCGUgCGCC-GCa -3' miRNA: 3'- gcCGCGgACCGaCGCGUAgGCGGaCG- -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 21190 | 0.67 | 0.22249 |
Target: 5'- gCGGCcuGCugCUGGuCUGCGCGU-UGCUUGCg -3' miRNA: 3'- -GCCG--CG--GACC-GACGCGUAgGCGGACG- -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 14401 | 0.67 | 0.22249 |
Target: 5'- aGGCGUagcgaaGCUGgGCGUCgccaggcgCGCCUGCg -3' miRNA: 3'- gCCGCGgac---CGACgCGUAG--------GCGGACG- -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 27842 | 0.67 | 0.22249 |
Target: 5'- uGGCGCC-GGCcGCGCcgCUGCUc-- -3' miRNA: 3'- gCCGCGGaCCGaCGCGuaGGCGGacg -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 2243 | 0.67 | 0.216841 |
Target: 5'- gCGGCGCgUGGCcGCGCAaugaaUCUuCUUGUc -3' miRNA: 3'- -GCCGCGgACCGaCGCGU-----AGGcGGACG- -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 39071 | 0.67 | 0.216841 |
Target: 5'- gCGGUGUgcGGCUGUaugucuauaaGUGUCCGCaCUGCa -3' miRNA: 3'- -GCCGCGgaCCGACG----------CGUAGGCG-GACG- -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 18455 | 0.67 | 0.216841 |
Target: 5'- aGGCGCUgGGCcagGCGCGcagCCGgCUGg -3' miRNA: 3'- gCCGCGGaCCGa--CGCGUa--GGCgGACg -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 27743 | 0.68 | 0.211316 |
Target: 5'- aGGCGCCcagcGuGCgGCGCuggCCGCCaacgGCa -3' miRNA: 3'- gCCGCGGa---C-CGaCGCGua-GGCGGa---CG- -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 1647 | 0.68 | 0.211316 |
Target: 5'- uCGGgGUa-GGuCUGCGCGUCCuGUUUGCg -3' miRNA: 3'- -GCCgCGgaCC-GACGCGUAGG-CGGACG- -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 27451 | 0.68 | 0.205911 |
Target: 5'- cCGuCGcCCUGG--GCGCAUCCGCCgccaGCa -3' miRNA: 3'- -GCcGC-GGACCgaCGCGUAGGCGGa---CG- -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 14360 | 0.68 | 0.200627 |
Target: 5'- gCGGUGuCCUGGaaggcggGgGCAUCCGCgCcGCg -3' miRNA: 3'- -GCCGC-GGACCga-----CgCGUAGGCG-GaCG- -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 22995 | 0.68 | 0.200627 |
Target: 5'- uCGGCuuucGCCUGGUcggccUGCuGC-UgCGCCUGCu -3' miRNA: 3'- -GCCG----CGGACCG-----ACG-CGuAgGCGGACG- -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 27418 | 0.68 | 0.195461 |
Target: 5'- uCGcGCGCCUGGCgcaccGCGCccggCgGCCgcagGCc -3' miRNA: 3'- -GC-CGCGGACCGa----CGCGua--GgCGGa---CG- -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 3700 | 0.68 | 0.195461 |
Target: 5'- aCGGCGacgcgCUGccccauGCgGCGCAUCCGCUcaUGCu -3' miRNA: 3'- -GCCGCg----GAC------CGaCGCGUAGGCGG--ACG- -5' |
|||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 13792 | 0.68 | 0.188919 |
Target: 5'- aCGGCGCgCUGGCUGCucaagaucgGCAaCCagggcaagcgcgacGCCgUGCg -3' miRNA: 3'- -GCCGCG-GACCGACG---------CGUaGG--------------CGG-ACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home