miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26802 5' -57.3 NC_005808.1 + 8544 0.66 0.523026
Target:  5'- aACGCucgacAGCCGC--GCCGaUGGCGgGCa -3'
miRNA:   3'- aUGCGu----UCGGCGuuCGGC-GCUGCaCG- -5'
26802 5' -57.3 NC_005808.1 + 8557 0.73 0.181394
Target:  5'- cGCGCucgaccucauccuGGGCguCGUAGGCCGCG-CGUGCg -3'
miRNA:   3'- aUGCG-------------UUCG--GCGUUCGGCGCuGCACG- -5'
26802 5' -57.3 NC_005808.1 + 8619 0.66 0.501772
Target:  5'- uUGCGCuucucGGCCGCugcGGUgGCGAgGUcGCc -3'
miRNA:   3'- -AUGCGu----UCGGCGu--UCGgCGCUgCA-CG- -5'
26802 5' -57.3 NC_005808.1 + 8937 0.67 0.450427
Target:  5'- aGCGguGGCCGUGccggauucgccAGCgGUGGcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGU-----------UCGgCGCU-GCACG- -5'
26802 5' -57.3 NC_005808.1 + 8984 0.69 0.357203
Target:  5'- aGCGguGGCCGUGccgccAGCgGUGGcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGU-----UCGgCGCU-GCACG- -5'
26802 5' -57.3 NC_005808.1 + 9026 0.72 0.201179
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26802 5' -57.3 NC_005808.1 + 9074 0.72 0.201179
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26802 5' -57.3 NC_005808.1 + 9122 0.72 0.201179
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26802 5' -57.3 NC_005808.1 + 9170 0.72 0.201179
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26802 5' -57.3 NC_005808.1 + 9218 0.72 0.201179
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26802 5' -57.3 NC_005808.1 + 9266 0.72 0.201179
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26802 5' -57.3 NC_005808.1 + 9314 0.72 0.201179
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26802 5' -57.3 NC_005808.1 + 9362 0.72 0.201179
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26802 5' -57.3 NC_005808.1 + 9408 0.74 0.164716
Target:  5'- cGCGCAGGCCGCGGGCUugcaggucuugaauaGCGuCGUuggucGCg -3'
miRNA:   3'- aUGCGUUCGGCGUUCGG---------------CGCuGCA-----CG- -5'
26802 5' -57.3 NC_005808.1 + 9506 0.66 0.523026
Target:  5'- aUGgGCGAGgaUGUAGGCCGCcGCGUcGCu -3'
miRNA:   3'- -AUgCGUUCg-GCGUUCGGCGcUGCA-CG- -5'
26802 5' -57.3 NC_005808.1 + 9684 0.66 0.480905
Target:  5'- --aGCcAGCCguGCAGGCCGUGGCc-GCa -3'
miRNA:   3'- augCGuUCGG--CGUUCGGCGCUGcaCG- -5'
26802 5' -57.3 NC_005808.1 + 9721 0.66 0.512353
Target:  5'- aUACGCcucgAAGCCGCGGGCgaacUGCucGugGUGg -3'
miRNA:   3'- -AUGCG----UUCGGCGUUCG----GCG--CugCACg -5'
26802 5' -57.3 NC_005808.1 + 10329 0.76 0.123019
Target:  5'- cGC-CAGGCCGUAGccgucGCUGCGGCGUGUg -3'
miRNA:   3'- aUGcGUUCGGCGUU-----CGGCGCUGCACG- -5'
26802 5' -57.3 NC_005808.1 + 11094 0.69 0.34612
Target:  5'- cGCGCGAGCaccuuGUcGGCUGCGgccaauugguucaaACGUGCg -3'
miRNA:   3'- aUGCGUUCGg----CGuUCGGCGC--------------UGCACG- -5'
26802 5' -57.3 NC_005808.1 + 11418 0.69 0.357203
Target:  5'- --aGC-AGCgGCGAGCCG--GCGUGCa -3'
miRNA:   3'- augCGuUCGgCGUUCGGCgcUGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.