miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26802 5' -57.3 NC_005808.1 + 9170 0.72 0.201179
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26802 5' -57.3 NC_005808.1 + 9218 0.72 0.201179
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26802 5' -57.3 NC_005808.1 + 9266 0.72 0.201179
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26802 5' -57.3 NC_005808.1 + 9362 0.72 0.201179
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26802 5' -57.3 NC_005808.1 + 9122 0.72 0.201179
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26802 5' -57.3 NC_005808.1 + 40921 0.72 0.202818
Target:  5'- --gGCucGCCGCGAGUccaagCGCGAgGUGCa -3'
miRNA:   3'- augCGuuCGGCGUUCG-----GCGCUgCACG- -5'
26802 5' -57.3 NC_005808.1 + 26462 0.72 0.202818
Target:  5'- aGCGUGcGGCCGCAguccuacgucggGGCCacCGACGUGCa -3'
miRNA:   3'- aUGCGU-UCGGCGU------------UCGGc-GCUGCACG- -5'
26802 5' -57.3 NC_005808.1 + 6176 0.72 0.202818
Target:  5'- aGCGCAGGCCGgucuuGCCGCaGCGUuuGCa -3'
miRNA:   3'- aUGCGUUCGGCguu--CGGCGcUGCA--CG- -5'
26802 5' -57.3 NC_005808.1 + 35510 0.72 0.207806
Target:  5'- cGCGUggGCgCGCcguggguAGGCCGCGGCGUc- -3'
miRNA:   3'- aUGCGuuCG-GCG-------UUCGGCGCUGCAcg -5'
26802 5' -57.3 NC_005808.1 + 25760 0.72 0.214045
Target:  5'- gGCGCGcugcugggcGGCgGCAacgauGGCCGCGAUGcGCg -3'
miRNA:   3'- aUGCGU---------UCGgCGU-----UCGGCGCUGCaCG- -5'
26802 5' -57.3 NC_005808.1 + 33268 0.72 0.214045
Target:  5'- gAUGCc-GCCGCccGCCGCGccgACGUGCg -3'
miRNA:   3'- aUGCGuuCGGCGuuCGGCGC---UGCACG- -5'
26802 5' -57.3 NC_005808.1 + 22526 0.72 0.214045
Target:  5'- cGCaGCGAGCaCGCGcAGCgCGCG-CGUGCc -3'
miRNA:   3'- aUG-CGUUCG-GCGU-UCG-GCGCuGCACG- -5'
26802 5' -57.3 NC_005808.1 + 14895 0.72 0.214045
Target:  5'- gGCgGCGAGCCGCugccGGCgCGCGGCcUGUa -3'
miRNA:   3'- aUG-CGUUCGGCGu---UCG-GCGCUGcACG- -5'
26802 5' -57.3 NC_005808.1 + 28077 0.72 0.219857
Target:  5'- --aGCGGGCaGguGGCCGCGGCGUcGUa -3'
miRNA:   3'- augCGUUCGgCguUCGGCGCUGCA-CG- -5'
26802 5' -57.3 NC_005808.1 + 4426 0.72 0.219857
Target:  5'- -uCGUAGGUCGUAcccGGCCGCaacaccgccaGGCGUGCg -3'
miRNA:   3'- auGCGUUCGGCGU---UCGGCG----------CUGCACG- -5'
26802 5' -57.3 NC_005808.1 + 14021 0.72 0.225802
Target:  5'- cACGCu-GCCGguGGCCG--ACGUGCg -3'
miRNA:   3'- aUGCGuuCGGCguUCGGCgcUGCACG- -5'
26802 5' -57.3 NC_005808.1 + 27428 0.72 0.231883
Target:  5'- gGCGCAccgcgcccggcGGCCGCAGGCCcUGGCGcUGg -3'
miRNA:   3'- aUGCGU-----------UCGGCGUUCGGcGCUGC-ACg -5'
26802 5' -57.3 NC_005808.1 + 35050 0.72 0.231883
Target:  5'- gUACGacccGGCCGCGAGCCa--GCGUGCg -3'
miRNA:   3'- -AUGCgu--UCGGCGUUCGGcgcUGCACG- -5'
26802 5' -57.3 NC_005808.1 + 28469 0.72 0.231883
Target:  5'- aAgGCAAGCCGCuGGCCGaCGAguaCG-GCg -3'
miRNA:   3'- aUgCGUUCGGCGuUCGGC-GCU---GCaCG- -5'
26802 5' -57.3 NC_005808.1 + 27794 0.71 0.244459
Target:  5'- aGCGCGcGCCGCGcAGCCGCaGcACGUccucGCg -3'
miRNA:   3'- aUGCGUuCGGCGU-UCGGCG-C-UGCA----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.