miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26802 5' -57.3 NC_005808.1 + 18042 0.66 0.501772
Target:  5'- --gGCGGGCUGCuuggGGGCCuuaccggcGCGGgGUGCg -3'
miRNA:   3'- augCGUUCGGCG----UUCGG--------CGCUgCACG- -5'
26802 5' -57.3 NC_005808.1 + 25205 0.66 0.501772
Target:  5'- cGCGCGA-CCGCuGGCC-CGGCuuguugGUGCg -3'
miRNA:   3'- aUGCGUUcGGCGuUCGGcGCUG------CACG- -5'
26802 5' -57.3 NC_005808.1 + 31296 0.66 0.501772
Target:  5'- aGCG-AAGCCugGCGA-CCGCGugGUGg -3'
miRNA:   3'- aUGCgUUCGG--CGUUcGGCGCugCACg -5'
26802 5' -57.3 NC_005808.1 + 14775 0.66 0.500719
Target:  5'- gGCGCca-CCGCGGGCagCGCgcgcgagGACGUGCu -3'
miRNA:   3'- aUGCGuucGGCGUUCG--GCG-------CUGCACG- -5'
26802 5' -57.3 NC_005808.1 + 3155 0.66 0.491288
Target:  5'- aGCGCAaccaaaaucgcAGCaugGCAAGCC-CGGCGUccGCu -3'
miRNA:   3'- aUGCGU-----------UCGg--CGUUCGGcGCUGCA--CG- -5'
26802 5' -57.3 NC_005808.1 + 24880 0.66 0.491288
Target:  5'- aUGCGCGcAGCUu---GCCGCGAUGgGCa -3'
miRNA:   3'- -AUGCGU-UCGGcguuCGGCGCUGCaCG- -5'
26802 5' -57.3 NC_005808.1 + 18454 0.66 0.491288
Target:  5'- aACGUGacGGUCGCGGcGCCGgCGGCGUcgGCc -3'
miRNA:   3'- aUGCGU--UCGGCGUU-CGGC-GCUGCA--CG- -5'
26802 5' -57.3 NC_005808.1 + 39775 0.66 0.490244
Target:  5'- cUGCGCGuGGCCGCGagcaccuGGCC-CGACGa-- -3'
miRNA:   3'- -AUGCGU-UCGGCGU-------UCGGcGCUGCacg -5'
26802 5' -57.3 NC_005808.1 + 41628 0.66 0.480905
Target:  5'- gGCgGCcaaguGGCUGCAAGCUGCcGugG-GCa -3'
miRNA:   3'- aUG-CGu----UCGGCGUUCGGCG-CugCaCG- -5'
26802 5' -57.3 NC_005808.1 + 34905 0.66 0.480905
Target:  5'- --gGCAAGCCGgccgccgagguCAAGCCGaCGACcugGCc -3'
miRNA:   3'- augCGUUCGGC-----------GUUCGGC-GCUGca-CG- -5'
26802 5' -57.3 NC_005808.1 + 40011 0.66 0.480905
Target:  5'- -uUGCAacagGGCgGCAAGCgCGCGcACGcGCu -3'
miRNA:   3'- auGCGU----UCGgCGUUCG-GCGC-UGCaCG- -5'
26802 5' -57.3 NC_005808.1 + 12626 0.66 0.480905
Target:  5'- gGCuGCAuccaGGCCGUcgugcGCCGCGACGacaaGCa -3'
miRNA:   3'- aUG-CGU----UCGGCGuu---CGGCGCUGCa---CG- -5'
26802 5' -57.3 NC_005808.1 + 9684 0.66 0.480905
Target:  5'- --aGCcAGCCguGCAGGCCGUGGCc-GCa -3'
miRNA:   3'- augCGuUCGG--CGUUCGGCGCUGcaCG- -5'
26802 5' -57.3 NC_005808.1 + 16547 0.67 0.470632
Target:  5'- aGCGCAuggAGCgCGCccGCCGCG-CGgGCu -3'
miRNA:   3'- aUGCGU---UCG-GCGuuCGGCGCuGCaCG- -5'
26802 5' -57.3 NC_005808.1 + 26530 0.67 0.470632
Target:  5'- cUACGgc-GCCGCGcGCgGCGgccACGUGCg -3'
miRNA:   3'- -AUGCguuCGGCGUuCGgCGC---UGCACG- -5'
26802 5' -57.3 NC_005808.1 + 16689 0.67 0.470632
Target:  5'- -cCGCAAGCUGCAAGUCGaaACccGCc -3'
miRNA:   3'- auGCGUUCGGCGUUCGGCgcUGcaCG- -5'
26802 5' -57.3 NC_005808.1 + 20013 0.67 0.470632
Target:  5'- -gUGCAAGaUCGCAA-CCGCGGCGagaaGCg -3'
miRNA:   3'- auGCGUUC-GGCGUUcGGCGCUGCa---CG- -5'
26802 5' -57.3 NC_005808.1 + 38191 0.67 0.46961
Target:  5'- cUACGacuGCCGCAcgcucaaGGCCcggcGCGACG-GCg -3'
miRNA:   3'- -AUGCguuCGGCGU-------UCGG----CGCUGCaCG- -5'
26802 5' -57.3 NC_005808.1 + 17397 0.67 0.460471
Target:  5'- aGC-CGGGCCaGC-GGUCGCG-CGUGCu -3'
miRNA:   3'- aUGcGUUCGG-CGuUCGGCGCuGCACG- -5'
26802 5' -57.3 NC_005808.1 + 19495 0.67 0.460471
Target:  5'- gUGgGCAGGCCGCugcgaaCCGUGGucuUGUGCu -3'
miRNA:   3'- -AUgCGUUCGGCGuuc---GGCGCU---GCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.