miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26804 3' -55.5 NC_005808.1 + 39112 1.08 0.000585
Target:  5'- aAGUGGCACCACACCAAGAAGCAGCCAu -3'
miRNA:   3'- -UCACCGUGGUGUGGUUCUUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 32721 0.78 0.104513
Target:  5'- ---cGCGCCugGCCGAGAAGCAGCg- -3'
miRNA:   3'- ucacCGUGGugUGGUUCUUCGUCGgu -5'
26804 3' -55.5 NC_005808.1 + 25148 0.75 0.170557
Target:  5'- cGUGGCACCugGCCucGAugcuGGCggGGCCAc -3'
miRNA:   3'- uCACCGUGGugUGGuuCU----UCG--UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 18336 0.74 0.190787
Target:  5'- --cGGCGCCACGCuCAAGGuGGCaAGCCGc -3'
miRNA:   3'- ucaCCGUGGUGUG-GUUCU-UCG-UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 13923 0.73 0.225066
Target:  5'- cGUGGCgcGCCGCGCUGGcGAGGCcGCCGg -3'
miRNA:   3'- uCACCG--UGGUGUGGUU-CUUCGuCGGU- -5'
26804 3' -55.5 NC_005808.1 + 14944 0.73 0.237604
Target:  5'- aGGUGGCGCC-CACCuGGGuAGCuuucAGCCGa -3'
miRNA:   3'- -UCACCGUGGuGUGGuUCU-UCG----UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 17440 0.72 0.24409
Target:  5'- cAGUGGCcccGCCAgCAUCGAGGccAGguGCCAc -3'
miRNA:   3'- -UCACCG---UGGU-GUGGUUCU--UCguCGGU- -5'
26804 3' -55.5 NC_005808.1 + 15149 0.72 0.264432
Target:  5'- -cUGGCAUaccaGCGCCAGGGccuGCGGCCGc -3'
miRNA:   3'- ucACCGUGg---UGUGGUUCUu--CGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 12728 0.72 0.278013
Target:  5'- gGGUGGUGCUAgACCcguucgcAGGAAGCGGCaCAa -3'
miRNA:   3'- -UCACCGUGGUgUGG-------UUCUUCGUCG-GU- -5'
26804 3' -55.5 NC_005808.1 + 35049 0.71 0.293664
Target:  5'- cGGUGGCGCCGCAgaUCGAGcacGCcGCCGa -3'
miRNA:   3'- -UCACCGUGGUGU--GGUUCuu-CGuCGGU- -5'
26804 3' -55.5 NC_005808.1 + 27485 0.71 0.301356
Target:  5'- ---cGCACCACGCgAGGAugccGGCGGCCu -3'
miRNA:   3'- ucacCGUGGUGUGgUUCU----UCGUCGGu -5'
26804 3' -55.5 NC_005808.1 + 18455 0.71 0.301356
Target:  5'- --aGGCGCUGgGCCAGGcgcGCAGCCGg -3'
miRNA:   3'- ucaCCGUGGUgUGGUUCuu-CGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 33396 0.71 0.301356
Target:  5'- cGU-GCGCCGCGCCGccGAGCAGgCCAa -3'
miRNA:   3'- uCAcCGUGGUGUGGUucUUCGUC-GGU- -5'
26804 3' -55.5 NC_005808.1 + 2846 0.7 0.325358
Target:  5'- cAGcGGCGCCAgCACCAGcGAGgGGCCu -3'
miRNA:   3'- -UCaCCGUGGU-GUGGUUcUUCgUCGGu -5'
26804 3' -55.5 NC_005808.1 + 31790 0.7 0.325358
Target:  5'- --aGGauucaGCCGCGCCGAGgcGCAGCa- -3'
miRNA:   3'- ucaCCg----UGGUGUGGUUCuuCGUCGgu -5'
26804 3' -55.5 NC_005808.1 + 15086 0.7 0.342133
Target:  5'- -----gACCGCGCCGAGAagcuGGCGGCCGa -3'
miRNA:   3'- ucaccgUGGUGUGGUUCU----UCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 13743 0.7 0.350751
Target:  5'- cGUGGCGCgGCGCUggGAcAGCuucggcaaguccGGCCGc -3'
miRNA:   3'- uCACCGUGgUGUGGuuCU-UCG------------UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 4429 0.7 0.350751
Target:  5'- ---cGUGCCGCGCCAgggGGAAGCcGCCAg -3'
miRNA:   3'- ucacCGUGGUGUGGU---UCUUCGuCGGU- -5'
26804 3' -55.5 NC_005808.1 + 30174 0.7 0.368447
Target:  5'- cAGuUGGCGCCagucggugaAgGCCAuGAAGUAGCCGc -3'
miRNA:   3'- -UC-ACCGUGG---------UgUGGUuCUUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 29461 0.69 0.377521
Target:  5'- -cUGGCACCAgGCgAcGAAGCgcgcGGCCAg -3'
miRNA:   3'- ucACCGUGGUgUGgUuCUUCG----UCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.