miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26804 3' -55.5 NC_005808.1 + 34678 0.67 0.54092
Target:  5'- aGGUGGaCGCCGaGCgCAAcGAGCAGCUg -3'
miRNA:   3'- -UCACC-GUGGUgUG-GUUcUUCGUCGGu -5'
26804 3' -55.5 NC_005808.1 + 2222 0.68 0.45529
Target:  5'- gGGUaGCACCACGCgCAGcAGGCGGCg- -3'
miRNA:   3'- -UCAcCGUGGUGUG-GUUcUUCGUCGgu -5'
26804 3' -55.5 NC_005808.1 + 37667 0.68 0.465612
Target:  5'- cGUGGCGCC-CGagggCAAGAAGCuGGUCGu -3'
miRNA:   3'- uCACCGUGGuGUg---GUUCUUCG-UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 38412 0.67 0.486612
Target:  5'- --cGGCcaacauGCC-CGCCAucGAGGCGGCCGg -3'
miRNA:   3'- ucaCCG------UGGuGUGGUu-CUUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 27428 0.67 0.50805
Target:  5'- --gGcGCACCGCGCCc---GGCGGCCGc -3'
miRNA:   3'- ucaC-CGUGGUGUGGuucuUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 33916 0.67 0.50805
Target:  5'- --cGGCG-CACACCuGGGcgcgcAGCAGCCGc -3'
miRNA:   3'- ucaCCGUgGUGUGGuUCU-----UCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 10307 0.67 0.529877
Target:  5'- cGG-GGUGCCACuucgccaguuucGCCAGGccGUAGCCGu -3'
miRNA:   3'- -UCaCCGUGGUG------------UGGUUCuuCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 24485 0.67 0.529877
Target:  5'- -uUGGC-CUGCGCCAGGAAGUcguaggGGCUg -3'
miRNA:   3'- ucACCGuGGUGUGGUUCUUCG------UCGGu -5'
26804 3' -55.5 NC_005808.1 + 32419 0.67 0.529877
Target:  5'- --cGcGCGCCACgucuGCCAAGAcgacGGCAGCg- -3'
miRNA:   3'- ucaC-CGUGGUG----UGGUUCU----UCGUCGgu -5'
26804 3' -55.5 NC_005808.1 + 9447 0.68 0.435025
Target:  5'- uGGUcGCGuCCACGCCGAGGgccugauaGGCAGCgAa -3'
miRNA:   3'- -UCAcCGU-GGUGUGGUUCU--------UCGUCGgU- -5'
26804 3' -55.5 NC_005808.1 + 38103 0.69 0.415291
Target:  5'- uGUGGCGCCGCGCgCAuccGGCGGUUu -3'
miRNA:   3'- uCACCGUGGUGUG-GUucuUCGUCGGu -5'
26804 3' -55.5 NC_005808.1 + 24277 0.69 0.415291
Target:  5'- cGUGGCGCCGgacagugacCACguGGggGCGGUgAg -3'
miRNA:   3'- uCACCGUGGU---------GUGguUCuuCGUCGgU- -5'
26804 3' -55.5 NC_005808.1 + 17440 0.72 0.24409
Target:  5'- cAGUGGCcccGCCAgCAUCGAGGccAGguGCCAc -3'
miRNA:   3'- -UCACCG---UGGU-GUGGUUCU--UCguCGGU- -5'
26804 3' -55.5 NC_005808.1 + 35049 0.71 0.293664
Target:  5'- cGGUGGCGCCGCAgaUCGAGcacGCcGCCGa -3'
miRNA:   3'- -UCACCGUGGUGU--GGUUCuu-CGuCGGU- -5'
26804 3' -55.5 NC_005808.1 + 27485 0.71 0.301356
Target:  5'- ---cGCACCACGCgAGGAugccGGCGGCCu -3'
miRNA:   3'- ucacCGUGGUGUGgUUCU----UCGUCGGu -5'
26804 3' -55.5 NC_005808.1 + 4429 0.7 0.350751
Target:  5'- ---cGUGCCGCGCCAgggGGAAGCcGCCAg -3'
miRNA:   3'- ucacCGUGGUGUGGU---UCUUCGuCGGU- -5'
26804 3' -55.5 NC_005808.1 + 30174 0.7 0.368447
Target:  5'- cAGuUGGCGCCagucggugaAgGCCAuGAAGUAGCCGc -3'
miRNA:   3'- -UC-ACCGUGG---------UgUGGUuCUUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 29461 0.69 0.377521
Target:  5'- -cUGGCACCAgGCgAcGAAGCgcgcGGCCAg -3'
miRNA:   3'- ucACCGUGGUgUGgUuCUUCG----UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 6898 0.69 0.396116
Target:  5'- -cUGGCAUCGCAUCAucaGGAAauaggcauuGCGGCCGa -3'
miRNA:   3'- ucACCGUGGUGUGGU---UCUU---------CGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 9253 0.69 0.415291
Target:  5'- cAGUu-CACCAUACCGcaGGAAGCGGUCGg -3'
miRNA:   3'- -UCAccGUGGUGUGGU--UCUUCGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.