miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26804 3' -55.5 NC_005808.1 + 29461 0.69 0.377521
Target:  5'- -cUGGCACCAgGCgAcGAAGCgcgcGGCCAg -3'
miRNA:   3'- ucACCGUGGUgUGgUuCUUCG----UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 6898 0.69 0.396116
Target:  5'- -cUGGCAUCGCAUCAucaGGAAauaggcauuGCGGCCGa -3'
miRNA:   3'- ucACCGUGGUGUGGU---UCUU---------CGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 9253 0.69 0.415291
Target:  5'- cAGUu-CACCAUACCGcaGGAAGCGGUCGg -3'
miRNA:   3'- -UCAccGUGGUGUGGU--UCUUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 24277 0.69 0.415291
Target:  5'- cGUGGCGCCGgacagugacCACguGGggGCGGUgAg -3'
miRNA:   3'- uCACCGUGGU---------GUGguUCuuCGUCGgU- -5'
26804 3' -55.5 NC_005808.1 + 38103 0.69 0.415291
Target:  5'- uGUGGCGCCGCGCgCAuccGGCGGUUu -3'
miRNA:   3'- uCACCGUGGUGUG-GUucuUCGUCGGu -5'
26804 3' -55.5 NC_005808.1 + 9447 0.68 0.435025
Target:  5'- uGGUcGCGuCCACGCCGAGGgccugauaGGCAGCgAa -3'
miRNA:   3'- -UCAcCGU-GGUGUGGUUCU--------UCGUCGgU- -5'
26804 3' -55.5 NC_005808.1 + 13213 0.67 0.497279
Target:  5'- -cUGGCcuACCGCGCCGAGuccgagggcugGGGCaaGGCCAc -3'
miRNA:   3'- ucACCG--UGGUGUGGUUC-----------UUCG--UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 37827 0.67 0.497279
Target:  5'- --gGGCGCagugugggcgaACGCCGAGAAcaucGCGGCCGu -3'
miRNA:   3'- ucaCCGUGg----------UGUGGUUCUU----CGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 30996 0.67 0.50805
Target:  5'- -cUGGCACUGCugCcc--GGCGGCCAg -3'
miRNA:   3'- ucACCGUGGUGugGuucuUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 33291 0.67 0.50805
Target:  5'- cGUGcGcCGCCAgguCGCCGAGGAagucaaugcGCAGCCGg -3'
miRNA:   3'- uCAC-C-GUGGU---GUGGUUCUU---------CGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 12836 0.67 0.50805
Target:  5'- ---cGCGCaCGCGCCuGGcAGCAGCCGa -3'
miRNA:   3'- ucacCGUG-GUGUGGuUCuUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 29872 0.67 0.52658
Target:  5'- --cGGCACCcaGCACCAAcGGGCcgggcgacuugaacAGCCAg -3'
miRNA:   3'- ucaCCGUGG--UGUGGUUcUUCG--------------UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 40160 0.67 0.529877
Target:  5'- cGUGGCGCCGauCUucGAGGcCGGCCu -3'
miRNA:   3'- uCACCGUGGUguGGuuCUUC-GUCGGu -5'
26804 3' -55.5 NC_005808.1 + 28362 0.67 0.538705
Target:  5'- cGUGGacgacgcacuuaACCGCGCCAAGGA--AGCCGc -3'
miRNA:   3'- uCACCg-----------UGGUGUGGUUCUUcgUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 36144 0.67 0.54092
Target:  5'- cGUGGUGCgugaguuCgGGGAAGCAGCCAa -3'
miRNA:   3'- uCACCGUGgugu---GgUUCUUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 32446 0.66 0.548695
Target:  5'- -cUGGCugCugACCGccuuccagaagaaaGGAGGCguGGCCGg -3'
miRNA:   3'- ucACCGugGugUGGU--------------UCUUCG--UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 37863 0.66 0.552038
Target:  5'- nGUGGCcgagaacaucGCgGuCAUCAucGAAGCAGCCAa -3'
miRNA:   3'- uCACCG----------UGgU-GUGGUu-CUUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 38455 0.66 0.552038
Target:  5'- aGGUGGgcggcuucCACUauGCGCCGGGAAGCAacGCUg -3'
miRNA:   3'- -UCACC--------GUGG--UGUGGUUCUUCGU--CGGu -5'
26804 3' -55.5 NC_005808.1 + 14029 0.66 0.563225
Target:  5'- cGGUGGCcgACgugCGCGCCGcGAuggccGGCGGCCGc -3'
miRNA:   3'- -UCACCG--UG---GUGUGGUuCU-----UCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 41992 0.66 0.563225
Target:  5'- --cGGCGCUGCugGCCGAcccgcAGGCGGCCAu -3'
miRNA:   3'- ucaCCGUGGUG--UGGUUc----UUCGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.