miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26804 3' -55.5 NC_005808.1 + 42353 0.66 0.574472
Target:  5'- --cGGCACCAC-CgGGGAaacccAGCGcGCCAa -3'
miRNA:   3'- ucaCCGUGGUGuGgUUCU-----UCGU-CGGU- -5'
26804 3' -55.5 NC_005808.1 + 8696 0.66 0.574472
Target:  5'- aGGUGuGCGCCGCGC--AGAuuGCuGCCGa -3'
miRNA:   3'- -UCAC-CGUGGUGUGguUCUu-CGuCGGU- -5'
26804 3' -55.5 NC_005808.1 + 33220 0.66 0.583506
Target:  5'- cAGUGGCugCACAaugcac-GCGGCCGc -3'
miRNA:   3'- -UCACCGugGUGUgguucuuCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 8278 0.66 0.584637
Target:  5'- --cGGCuuccaggGCCACgcuGCCGGGGcaguGCAGCCAg -3'
miRNA:   3'- ucaCCG-------UGGUG---UGGUUCUu---CGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 4822 0.66 0.595972
Target:  5'- aGGUcGGgGCCgGCGCCGucgucgaauucacGGAAaGCGGCCAg -3'
miRNA:   3'- -UCA-CCgUGG-UGUGGU-------------UCUU-CGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 36442 0.66 0.597108
Target:  5'- gGGUGcccGUGCCuCACCccugGGGAAGUAGCCu -3'
miRNA:   3'- -UCAC---CGUGGuGUGG----UUCUUCGUCGGu -5'
26804 3' -55.5 NC_005808.1 + 6369 0.66 0.597108
Target:  5'- cGG-GGCGCUggguuACACCAGGucGGCcGCCGc -3'
miRNA:   3'- -UCaCCGUGG-----UGUGGUUCu-UCGuCGGU- -5'
26804 3' -55.5 NC_005808.1 + 31790 0.7 0.325358
Target:  5'- --aGGauucaGCCGCGCCGAGgcGCAGCa- -3'
miRNA:   3'- ucaCCg----UGGUGUGGUUCuuCGUCGgu -5'
26804 3' -55.5 NC_005808.1 + 32721 0.78 0.104513
Target:  5'- ---cGCGCCugGCCGAGAAGCAGCg- -3'
miRNA:   3'- ucacCGUGGugUGGUUCUUCGUCGgu -5'
26804 3' -55.5 NC_005808.1 + 25148 0.75 0.170557
Target:  5'- cGUGGCACCugGCCucGAugcuGGCggGGCCAc -3'
miRNA:   3'- uCACCGUGGugUGGuuCU----UCG--UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 18336 0.74 0.190787
Target:  5'- --cGGCGCCACGCuCAAGGuGGCaAGCCGc -3'
miRNA:   3'- ucaCCGUGGUGUG-GUUCU-UCG-UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 13923 0.73 0.225066
Target:  5'- cGUGGCgcGCCGCGCUGGcGAGGCcGCCGg -3'
miRNA:   3'- uCACCG--UGGUGUGGUU-CUUCGuCGGU- -5'
26804 3' -55.5 NC_005808.1 + 14944 0.73 0.237604
Target:  5'- aGGUGGCGCC-CACCuGGGuAGCuuucAGCCGa -3'
miRNA:   3'- -UCACCGUGGuGUGGuUCU-UCG----UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 15149 0.72 0.264432
Target:  5'- -cUGGCAUaccaGCGCCAGGGccuGCGGCCGc -3'
miRNA:   3'- ucACCGUGg---UGUGGUUCUu--CGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 12728 0.72 0.278013
Target:  5'- gGGUGGUGCUAgACCcguucgcAGGAAGCGGCaCAa -3'
miRNA:   3'- -UCACCGUGGUgUGG-------UUCUUCGUCG-GU- -5'
26804 3' -55.5 NC_005808.1 + 18455 0.71 0.301356
Target:  5'- --aGGCGCUGgGCCAGGcgcGCAGCCGg -3'
miRNA:   3'- ucaCCGUGGUgUGGUUCuu-CGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 33396 0.71 0.301356
Target:  5'- cGU-GCGCCGCGCCGccGAGCAGgCCAa -3'
miRNA:   3'- uCAcCGUGGUGUGGUucUUCGUC-GGU- -5'
26804 3' -55.5 NC_005808.1 + 2846 0.7 0.325358
Target:  5'- cAGcGGCGCCAgCACCAGcGAGgGGCCu -3'
miRNA:   3'- -UCaCCGUGGU-GUGGUUcUUCgUCGGu -5'
26804 3' -55.5 NC_005808.1 + 20012 0.67 0.496208
Target:  5'- cGUGcaagaucGCaACCGCGgCGAGAAGCGGCaCAa -3'
miRNA:   3'- uCAC-------CG-UGGUGUgGUUCUUCGUCG-GU- -5'
26804 3' -55.5 NC_005808.1 + 15086 0.7 0.342133
Target:  5'- -----gACCGCGCCGAGAagcuGGCGGCCGa -3'
miRNA:   3'- ucaccgUGGUGUGGUUCU----UCGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.