miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26804 3' -55.5 NC_005808.1 + 14029 0.66 0.563225
Target:  5'- cGGUGGCcgACgugCGCGCCGcGAuggccGGCGGCCGc -3'
miRNA:   3'- -UCACCG--UG---GUGUGGUuCU-----UCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 14413 0.68 0.476055
Target:  5'- --aGGCGCCGCACCugcuGGgcGUGGgCAa -3'
miRNA:   3'- ucaCCGUGGUGUGGu---UCuuCGUCgGU- -5'
26804 3' -55.5 NC_005808.1 + 14944 0.73 0.237604
Target:  5'- aGGUGGCGCC-CACCuGGGuAGCuuucAGCCGa -3'
miRNA:   3'- -UCACCGUGGuGUGGuUCU-UCG----UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 15086 0.7 0.342133
Target:  5'- -----gACCGCGCCGAGAagcuGGCGGCCGa -3'
miRNA:   3'- ucaccgUGGUGUGGUUCU----UCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 15149 0.72 0.264432
Target:  5'- -cUGGCAUaccaGCGCCAGGGccuGCGGCCGc -3'
miRNA:   3'- ucACCGUGg---UGUGGUUCUu--CGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 16936 0.66 0.563225
Target:  5'- uAG-GGCACgGCGCCGuccAGCAGCg- -3'
miRNA:   3'- -UCaCCGUGgUGUGGUucuUCGUCGgu -5'
26804 3' -55.5 NC_005808.1 + 17377 0.69 0.377521
Target:  5'- gGGcUGGaACCGCACCAAcAAGCcgGGCCAg -3'
miRNA:   3'- -UC-ACCgUGGUGUGGUUcUUCG--UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 17440 0.72 0.24409
Target:  5'- cAGUGGCcccGCCAgCAUCGAGGccAGguGCCAc -3'
miRNA:   3'- -UCACCG---UGGU-GUGGUUCU--UCguCGGU- -5'
26804 3' -55.5 NC_005808.1 + 18336 0.74 0.190787
Target:  5'- --cGGCGCCACGCuCAAGGuGGCaAGCCGc -3'
miRNA:   3'- ucaCCGUGGUGUG-GUUCU-UCG-UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 18455 0.71 0.301356
Target:  5'- --aGGCGCUGgGCCAGGcgcGCAGCCGg -3'
miRNA:   3'- ucaCCGUGGUgUGGUUCuu-CGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 20012 0.67 0.496208
Target:  5'- cGUGcaagaucGCaACCGCGgCGAGAAGCGGCaCAa -3'
miRNA:   3'- uCAC-------CG-UGGUGUgGUUCUUCGUCG-GU- -5'
26804 3' -55.5 NC_005808.1 + 21001 0.68 0.444081
Target:  5'- --cGGCACCAauccgcagaugacCGCCAccGAAGUGGCCGa -3'
miRNA:   3'- ucaCCGUGGU-------------GUGGUu-CUUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 24277 0.69 0.415291
Target:  5'- cGUGGCGCCGgacagugacCACguGGggGCGGUgAg -3'
miRNA:   3'- uCACCGUGGU---------GUGguUCuuCGUCGgU- -5'
26804 3' -55.5 NC_005808.1 + 24485 0.67 0.529877
Target:  5'- -uUGGC-CUGCGCCAGGAAGUcguaggGGCUg -3'
miRNA:   3'- ucACCGuGGUGUGGUUCUUCG------UCGGu -5'
26804 3' -55.5 NC_005808.1 + 25148 0.75 0.170557
Target:  5'- cGUGGCACCugGCCucGAugcuGGCggGGCCAc -3'
miRNA:   3'- uCACCGUGGugUGGuuCU----UCG--UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 26533 0.68 0.435025
Target:  5'- --cGGCGCCGCGCgc---GGCGGCCAc -3'
miRNA:   3'- ucaCCGUGGUGUGguucuUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 27428 0.67 0.50805
Target:  5'- --gGcGCACCGCGCCc---GGCGGCCGc -3'
miRNA:   3'- ucaC-CGUGGUGUGGuucuUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 27485 0.71 0.301356
Target:  5'- ---cGCACCACGCgAGGAugccGGCGGCCu -3'
miRNA:   3'- ucacCGUGGUGUGgUUCU----UCGUCGGu -5'
26804 3' -55.5 NC_005808.1 + 27580 0.66 0.585769
Target:  5'- aAG-GGCACCgGCAgCAGGcGGC-GCCAg -3'
miRNA:   3'- -UCaCCGUGG-UGUgGUUCuUCGuCGGU- -5'
26804 3' -55.5 NC_005808.1 + 28362 0.67 0.538705
Target:  5'- cGUGGacgacgcacuuaACCGCGCCAAGGA--AGCCGc -3'
miRNA:   3'- uCACCg-----------UGGUGUGGUUCUUcgUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.