miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26804 3' -55.5 NC_005808.1 + 36442 0.66 0.597108
Target:  5'- gGGUGcccGUGCCuCACCccugGGGAAGUAGCCu -3'
miRNA:   3'- -UCAC---CGUGGuGUGG----UUCUUCGUCGGu -5'
26804 3' -55.5 NC_005808.1 + 4822 0.66 0.595972
Target:  5'- aGGUcGGgGCCgGCGCCGucgucgaauucacGGAAaGCGGCCAg -3'
miRNA:   3'- -UCA-CCgUGG-UGUGGU-------------UCUU-CGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 8278 0.66 0.584637
Target:  5'- --cGGCuuccaggGCCACgcuGCCGGGGcaguGCAGCCAg -3'
miRNA:   3'- ucaCCG-------UGGUG---UGGUUCUu---CGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 33220 0.66 0.583506
Target:  5'- cAGUGGCugCACAaugcac-GCGGCCGc -3'
miRNA:   3'- -UCACCGugGUGUgguucuuCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 8696 0.66 0.574472
Target:  5'- aGGUGuGCGCCGCGC--AGAuuGCuGCCGa -3'
miRNA:   3'- -UCAC-CGUGGUGUGguUCUu-CGuCGGU- -5'
26804 3' -55.5 NC_005808.1 + 42353 0.66 0.574472
Target:  5'- --cGGCACCAC-CgGGGAaacccAGCGcGCCAa -3'
miRNA:   3'- ucaCCGUGGUGuGgUUCU-----UCGU-CGGU- -5'
26804 3' -55.5 NC_005808.1 + 41992 0.66 0.563225
Target:  5'- --cGGCGCUGCugGCCGAcccgcAGGCGGCCAu -3'
miRNA:   3'- ucaCCGUGGUG--UGGUUc----UUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 33396 0.71 0.301356
Target:  5'- cGU-GCGCCGCGCCGccGAGCAGgCCAa -3'
miRNA:   3'- uCAcCGUGGUGUGGUucUUCGUC-GGU- -5'
26804 3' -55.5 NC_005808.1 + 38455 0.66 0.552038
Target:  5'- aGGUGGgcggcuucCACUauGCGCCGGGAAGCAacGCUg -3'
miRNA:   3'- -UCACC--------GUGG--UGUGGUUCUUCGU--CGGu -5'
26804 3' -55.5 NC_005808.1 + 37863 0.66 0.552038
Target:  5'- nGUGGCcgagaacaucGCgGuCAUCAucGAAGCAGCCAa -3'
miRNA:   3'- uCACCG----------UGgU-GUGGUu-CUUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 32446 0.66 0.548695
Target:  5'- -cUGGCugCugACCGccuuccagaagaaaGGAGGCguGGCCGg -3'
miRNA:   3'- ucACCGugGugUGGU--------------UCUUCG--UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 36144 0.67 0.54092
Target:  5'- cGUGGUGCgugaguuCgGGGAAGCAGCCAa -3'
miRNA:   3'- uCACCGUGgugu---GgUUCUUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 28362 0.67 0.538705
Target:  5'- cGUGGacgacgcacuuaACCGCGCCAAGGA--AGCCGc -3'
miRNA:   3'- uCACCg-----------UGGUGUGGUUCUUcgUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 40160 0.67 0.529877
Target:  5'- cGUGGCGCCGauCUucGAGGcCGGCCu -3'
miRNA:   3'- uCACCGUGGUguGGuuCUUC-GUCGGu -5'
26804 3' -55.5 NC_005808.1 + 29872 0.67 0.52658
Target:  5'- --cGGCACCcaGCACCAAcGGGCcgggcgacuugaacAGCCAg -3'
miRNA:   3'- ucaCCGUGG--UGUGGUUcUUCG--------------UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 18455 0.71 0.301356
Target:  5'- --aGGCGCUGgGCCAGGcgcGCAGCCGg -3'
miRNA:   3'- ucaCCGUGGUgUGGUUCuu-CGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 12728 0.72 0.278013
Target:  5'- gGGUGGUGCUAgACCcguucgcAGGAAGCGGCaCAa -3'
miRNA:   3'- -UCACCGUGGUgUGG-------UUCUUCGUCG-GU- -5'
26804 3' -55.5 NC_005808.1 + 15149 0.72 0.264432
Target:  5'- -cUGGCAUaccaGCGCCAGGGccuGCGGCCGc -3'
miRNA:   3'- ucACCGUGg---UGUGGUUCUu--CGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 14944 0.73 0.237604
Target:  5'- aGGUGGCGCC-CACCuGGGuAGCuuucAGCCGa -3'
miRNA:   3'- -UCACCGUGGuGUGGuUCU-UCG----UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 13923 0.73 0.225066
Target:  5'- cGUGGCgcGCCGCGCUGGcGAGGCcGCCGg -3'
miRNA:   3'- uCACCG--UGGUGUGGUU-CUUCGuCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.