miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26807 5' -54.7 NC_005808.1 + 23931 0.71 0.353723
Target:  5'- -uGUAACAGGcCGGGGGCGGGCgccGCc -3'
miRNA:   3'- guCGUUGUCUaGCUCCUGUCCGa--CGc -5'
26807 5' -54.7 NC_005808.1 + 24082 0.67 0.610923
Target:  5'- gCGGCGACcGcgCGGGGcACGGGCaccccgcuacaUGCGc -3'
miRNA:   3'- -GUCGUUGuCuaGCUCC-UGUCCG-----------ACGC- -5'
26807 5' -54.7 NC_005808.1 + 27475 0.67 0.599603
Target:  5'- cCAGCAugGGGUCGGGccuGGUAGGCaGCu -3'
miRNA:   3'- -GUCGUugUCUAGCUC---CUGUCCGaCGc -5'
26807 5' -54.7 NC_005808.1 + 27817 0.69 0.489483
Target:  5'- cCAGCGacaucgugaaGCAGAUCGAcaccGACAcGCUGCGc -3'
miRNA:   3'- -GUCGU----------UGUCUAGCUc---CUGUcCGACGC- -5'
26807 5' -54.7 NC_005808.1 + 28056 0.68 0.521704
Target:  5'- uCGGCGACGGucugcUCGAacagcGGGCAGGUggccGCGg -3'
miRNA:   3'- -GUCGUUGUCu----AGCU-----CCUGUCCGa---CGC- -5'
26807 5' -54.7 NC_005808.1 + 32476 0.66 0.65629
Target:  5'- aGGCGugGccGGUaCGAGGACAGGCa--- -3'
miRNA:   3'- gUCGUugU--CUA-GCUCCUGUCCGacgc -5'
26807 5' -54.7 NC_005808.1 + 32930 0.67 0.610923
Target:  5'- aCGGCGGCuGuUCGgccAGGGCGaccacGGCUGCGu -3'
miRNA:   3'- -GUCGUUGuCuAGC---UCCUGU-----CCGACGC- -5'
26807 5' -54.7 NC_005808.1 + 34046 0.68 0.532629
Target:  5'- cCAGgAugAGGUCGAGcGCGGcCUGCGa -3'
miRNA:   3'- -GUCgUugUCUAGCUCcUGUCcGACGC- -5'
26807 5' -54.7 NC_005808.1 + 34360 0.69 0.489483
Target:  5'- cCAGCGACuucgccGA-CGAGGGCAcGGCcGCGc -3'
miRNA:   3'- -GUCGUUGu-----CUaGCUCCUGU-CCGaCGC- -5'
26807 5' -54.7 NC_005808.1 + 35385 0.66 0.6676
Target:  5'- gCGGC-GCAGAUgcugcCGuGGACAucgcgcugucccGGCUGCGu -3'
miRNA:   3'- -GUCGuUGUCUA-----GCuCCUGU------------CCGACGC- -5'
26807 5' -54.7 NC_005808.1 + 40256 1.08 0.000885
Target:  5'- cCAGCAACAGAUCGAGGACAGGCUGCGc -3'
miRNA:   3'- -GUCGUUGUCUAGCUCCUGUCCGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.