Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26807 | 5' | -54.7 | NC_005808.1 | + | 11747 | 0.68 | 0.500124 |
Target: 5'- -uGCgAACuGAUCGGcGACAGGUUGCa -3' miRNA: 3'- guCG-UUGuCUAGCUcCUGUCCGACGc -5' |
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26807 | 5' | -54.7 | NC_005808.1 | + | 10997 | 0.66 | 0.644956 |
Target: 5'- aAGCAGCAGGUa-GGGccagaaGCAGGCccagGCGa -3' miRNA: 3'- gUCGUUGUCUAgcUCC------UGUCCGa---CGC- -5' |
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26807 | 5' | -54.7 | NC_005808.1 | + | 7066 | 0.68 | 0.500124 |
Target: 5'- gGGCGGCAGcGUCGuuuGaACAGGCUGgCGg -3' miRNA: 3'- gUCGUUGUC-UAGCu--CcUGUCCGAC-GC- -5' |
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26807 | 5' | -54.7 | NC_005808.1 | + | 5298 | 0.69 | 0.478948 |
Target: 5'- -uGCAugucugGCAGGUCGAGGccgUAGGCcGCGa -3' miRNA: 3'- guCGU------UGUCUAGCUCCu--GUCCGaCGC- -5' |
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26807 | 5' | -54.7 | NC_005808.1 | + | 5250 | 0.68 | 0.500124 |
Target: 5'- uCGGcCGGCAGGUCGGGGuC-GGCaaUGCGu -3' miRNA: 3'- -GUC-GUUGUCUAGCUCCuGuCCG--ACGC- -5' |
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26807 | 5' | -54.7 | NC_005808.1 | + | 4828 | 0.66 | 0.644956 |
Target: 5'- cCGGCGACAGGUCGccGuagucgaugaccAUAGGUUGCc -3' miRNA: 3'- -GUCGUUGUCUAGCucC------------UGUCCGACGc -5' |
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26807 | 5' | -54.7 | NC_005808.1 | + | 3804 | 0.69 | 0.478948 |
Target: 5'- gGGCAGCAugaccaggcGGUCGGGGGCGccGUUGCGa -3' miRNA: 3'- gUCGUUGU---------CUAGCUCCUGUc-CGACGC- -5' |
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26807 | 5' | -54.7 | NC_005808.1 | + | 2966 | 0.7 | 0.408616 |
Target: 5'- gAGC-ACGuGAUCGAuGACAGGUUGCu -3' miRNA: 3'- gUCGuUGU-CUAGCUcCUGUCCGACGc -5' |
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26807 | 5' | -54.7 | NC_005808.1 | + | 2371 | 0.74 | 0.233918 |
Target: 5'- aCGGCAACGGuUCGAGGcGCAcGGCaugGCGg -3' miRNA: 3'- -GUCGUUGUCuAGCUCC-UGU-CCGa--CGC- -5' |
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26807 | 5' | -54.7 | NC_005808.1 | + | 2170 | 0.68 | 0.543636 |
Target: 5'- uGGCgAACAGuugCGAGGugAGGCUa-- -3' miRNA: 3'- gUCG-UUGUCua-GCUCCugUCCGAcgc -5' |
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26807 | 5' | -54.7 | NC_005808.1 | + | 409 | 0.66 | 0.629069 |
Target: 5'- cCAGCAGCAcggcgguGAUCGucGGCcguaccuugucguuGGGCUGCu -3' miRNA: 3'- -GUCGUUGU-------CUAGCucCUG--------------UCCGACGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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