Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26810 | 3' | -57.8 | NC_005808.1 | + | 19501 | 0.7 | 0.271305 |
Target: 5'- aGGCCGCUGCgaacCGUGGUCuugugcuCGGUGAa -3' miRNA: 3'- gCCGGCGACGa---GUACUAGcu-----GCCGUU- -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 29763 | 0.69 | 0.292959 |
Target: 5'- uCGGCUGCUGCcaggcgCGUGcgCGAgauuuCGGCAu -3' miRNA: 3'- -GCCGGCGACGa-----GUACuaGCU-----GCCGUu -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 18572 | 0.69 | 0.308132 |
Target: 5'- aGGCCGC-GCUCGcGGU-GACGGCc- -3' miRNA: 3'- gCCGGCGaCGAGUaCUAgCUGCCGuu -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 13014 | 0.69 | 0.332002 |
Target: 5'- aGGCCGCgcaGCgcaGUGG-CGACGGCc- -3' miRNA: 3'- gCCGGCGa--CGag-UACUaGCUGCCGuu -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 25174 | 0.68 | 0.348656 |
Target: 5'- gGGCCaCUGCUCAaGGgcgaCGugGGCGc -3' miRNA: 3'- gCCGGcGACGAGUaCUa---GCugCCGUu -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 17067 | 0.67 | 0.402103 |
Target: 5'- gGGgCGCUGC-CGg---CGGCGGCAAa -3' miRNA: 3'- gCCgGCGACGaGUacuaGCUGCCGUU- -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 39605 | 0.66 | 0.450427 |
Target: 5'- -cGCUGCUGCgcuau-UCGGCGGCAAc -3' miRNA: 3'- gcCGGCGACGaguacuAGCUGCCGUU- -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 22397 | 0.66 | 0.460471 |
Target: 5'- gCGGgCGCUGC-CAaGAcCGAgGGCGAc -3' miRNA: 3'- -GCCgGCGACGaGUaCUaGCUgCCGUU- -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 39045 | 0.69 | 0.332002 |
Target: 5'- aGcCCGCUGCUgCGcUGuUCGGCGGCAGc -3' miRNA: 3'- gCcGGCGACGA-GU-ACuAGCUGCCGUU- -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 34548 | 0.69 | 0.308132 |
Target: 5'- uGGgCGC-GCgUCAUGGaCGGCGGCAAg -3' miRNA: 3'- gCCgGCGaCG-AGUACUaGCUGCCGUU- -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 13792 | 0.7 | 0.264378 |
Target: 5'- aCGGCgcgcugGCUGCUCAaGAUCGGCaaccagGGCAAg -3' miRNA: 3'- -GCCGg-----CGACGAGUaCUAGCUG------CCGUU- -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 1146 | 0.7 | 0.257596 |
Target: 5'- gCGGCCGUUugcGCUCGccGUCGAUGGUGAa -3' miRNA: 3'- -GCCGGCGA---CGAGUacUAGCUGCCGUU- -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 35278 | 0.75 | 0.116213 |
Target: 5'- cCGGCUGCUGCguucgCAgaccAUCGACGGCGc -3' miRNA: 3'- -GCCGGCGACGa----GUac--UAGCUGCCGUu -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 13643 | 0.76 | 0.095069 |
Target: 5'- uCGGCauguCGCUGCaUCAUGAguUCGAUGGCAGc -3' miRNA: 3'- -GCCG----GCGACG-AGUACU--AGCUGCCGUU- -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 7543 | 0.66 | 0.480905 |
Target: 5'- uCGGCgGCgUGCUC--GAUCuGCGGCGc -3' miRNA: 3'- -GCCGgCG-ACGAGuaCUAGcUGCCGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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