Results 21 - 35 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26810 | 3' | -57.8 | NC_005808.1 | + | 25174 | 0.68 | 0.348656 |
Target: 5'- gGGCCaCUGCUCAaGGgcgaCGugGGCGc -3' miRNA: 3'- gCCGGcGACGAGUaCUa---GCugCCGUu -5' |
|||||||
26810 | 3' | -57.8 | NC_005808.1 | + | 25759 | 0.71 | 0.214045 |
Target: 5'- gGGCgCGCUGCUgGg---CGGCGGCAAc -3' miRNA: 3'- gCCG-GCGACGAgUacuaGCUGCCGUU- -5' |
|||||||
26810 | 3' | -57.8 | NC_005808.1 | + | 29763 | 0.69 | 0.292959 |
Target: 5'- uCGGCUGCUGCcaggcgCGUGcgCGAgauuuCGGCAu -3' miRNA: 3'- -GCCGGCGACGa-----GUACuaGCU-----GCCGUu -5' |
|||||||
26810 | 3' | -57.8 | NC_005808.1 | + | 30566 | 0.67 | 0.39284 |
Target: 5'- cCGGCCGCUGUagaugCGgcaGAUgGugGGCu- -3' miRNA: 3'- -GCCGGCGACGa----GUa--CUAgCugCCGuu -5' |
|||||||
26810 | 3' | -57.8 | NC_005808.1 | + | 31086 | 0.66 | 0.439519 |
Target: 5'- gGuGCCGCUGCUCAcc-UCGGugcaggcCGGCGAg -3' miRNA: 3'- gC-CGGCGACGAGUacuAGCU-------GCCGUU- -5' |
|||||||
26810 | 3' | -57.8 | NC_005808.1 | + | 31189 | 0.67 | 0.402103 |
Target: 5'- gGGCCGCgcacGUUCugccugacGGUCGAgGGCGAa -3' miRNA: 3'- gCCGGCGa---CGAGua------CUAGCUgCCGUU- -5' |
|||||||
26810 | 3' | -57.8 | NC_005808.1 | + | 31373 | 0.68 | 0.374735 |
Target: 5'- aCGGCCggaaGCUGCUCAaggcguUGAacccCGACuGGCAAc -3' miRNA: 3'- -GCCGG----CGACGAGU------ACUa---GCUG-CCGUU- -5' |
|||||||
26810 | 3' | -57.8 | NC_005808.1 | + | 34548 | 0.69 | 0.308132 |
Target: 5'- uGGgCGC-GCgUCAUGGaCGGCGGCAAg -3' miRNA: 3'- gCCgGCGaCG-AGUACUaGCUGCCGUU- -5' |
|||||||
26810 | 3' | -57.8 | NC_005808.1 | + | 35278 | 0.75 | 0.116213 |
Target: 5'- cCGGCUGCUGCguucgCAgaccAUCGACGGCGc -3' miRNA: 3'- -GCCGGCGACGa----GUac--UAGCUGCCGUu -5' |
|||||||
26810 | 3' | -57.8 | NC_005808.1 | + | 36132 | 0.68 | 0.374735 |
Target: 5'- gCGGCgUGCaGUUCcUGcgCGACGGCGAc -3' miRNA: 3'- -GCCG-GCGaCGAGuACuaGCUGCCGUU- -5' |
|||||||
26810 | 3' | -57.8 | NC_005808.1 | + | 39045 | 0.69 | 0.332002 |
Target: 5'- aGcCCGCUGCUgCGcUGuUCGGCGGCAGc -3' miRNA: 3'- gCcGGCGACGA-GU-ACuAGCUGCCGUU- -5' |
|||||||
26810 | 3' | -57.8 | NC_005808.1 | + | 39605 | 0.66 | 0.450427 |
Target: 5'- -cGCUGCUGCgcuau-UCGGCGGCAAc -3' miRNA: 3'- gcCGGCGACGaguacuAGCUGCCGUU- -5' |
|||||||
26810 | 3' | -57.8 | NC_005808.1 | + | 41436 | 0.66 | 0.440504 |
Target: 5'- aCGGCUGUccUUCAccAUCGACGGCGAg -3' miRNA: 3'- -GCCGGCGacGAGUacUAGCUGCCGUU- -5' |
|||||||
26810 | 3' | -57.8 | NC_005808.1 | + | 41469 | 1.07 | 0.000508 |
Target: 5'- aCGGCCGCUGCUCAUGAUCGACGGCAAg -3' miRNA: 3'- -GCCGGCGACGAGUACUAGCUGCCGUU- -5' |
|||||||
26810 | 3' | -57.8 | NC_005808.1 | + | 42220 | 0.67 | 0.383716 |
Target: 5'- uGGCCGC-GCUCA--AUCGGCaGGCc- -3' miRNA: 3'- gCCGGCGaCGAGUacUAGCUG-CCGuu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home