Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26810 | 3' | -57.8 | NC_005808.1 | + | 1146 | 0.7 | 0.257596 |
Target: 5'- gCGGCCGUUugcGCUCGccGUCGAUGGUGAa -3' miRNA: 3'- -GCCGGCGA---CGAGUacUAGCUGCCGUU- -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 1329 | 0.67 | 0.431682 |
Target: 5'- aGGCCGacaagcgcgaggaaGC-CGUGGUCGGCGGCc- -3' miRNA: 3'- gCCGGCga------------CGaGUACUAGCUGCCGuu -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 2556 | 0.67 | 0.39284 |
Target: 5'- gGGCCGC-GCUCGUaAUUGcCGGCu- -3' miRNA: 3'- gCCGGCGaCGAGUAcUAGCuGCCGuu -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 4354 | 0.71 | 0.224602 |
Target: 5'- uGGCCGUUGCguugccggugcgCGUGAaggCGACGGCc- -3' miRNA: 3'- gCCGGCGACGa-----------GUACUa--GCUGCCGuu -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 4872 | 0.67 | 0.430707 |
Target: 5'- aGGUCGUUGCcCAgcgcggCGACGGCGg -3' miRNA: 3'- gCCGGCGACGaGUacua--GCUGCCGUu -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 7543 | 0.66 | 0.480905 |
Target: 5'- uCGGCgGCgUGCUC--GAUCuGCGGCGc -3' miRNA: 3'- -GCCGgCG-ACGAGuaCUAGcUGCCGUu -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 8628 | 0.74 | 0.154089 |
Target: 5'- uCGGCCGCUGCgguggCGaGGUCGcCGGCc- -3' miRNA: 3'- -GCCGGCGACGa----GUaCUAGCuGCCGuu -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 9736 | 0.66 | 0.450427 |
Target: 5'- gCGGgCGaaCUGCUCGUGGUgGGCGcGCu- -3' miRNA: 3'- -GCCgGC--GACGAGUACUAgCUGC-CGuu -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 10501 | 0.67 | 0.411504 |
Target: 5'- gGGCCG-UGCUCuUGAUCGAacugcugaccgcCGGCc- -3' miRNA: 3'- gCCGGCgACGAGuACUAGCU------------GCCGuu -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 12239 | 0.66 | 0.480905 |
Target: 5'- cCGGCaacaGCgGCaUCGaacgGAUCGGCGGUAGu -3' miRNA: 3'- -GCCGg---CGaCG-AGUa---CUAGCUGCCGUU- -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 13014 | 0.69 | 0.332002 |
Target: 5'- aGGCCGCgcaGCgcaGUGG-CGACGGCc- -3' miRNA: 3'- gCCGGCGa--CGag-UACUaGCUGCCGuu -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 13643 | 0.76 | 0.095069 |
Target: 5'- uCGGCauguCGCUGCaUCAUGAguUCGAUGGCAGc -3' miRNA: 3'- -GCCG----GCGACG-AGUACU--AGCUGCCGUU- -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 13792 | 0.7 | 0.264378 |
Target: 5'- aCGGCgcgcugGCUGCUCAaGAUCGGCaaccagGGCAAg -3' miRNA: 3'- -GCCGg-----CGACGAGUaCUAGCUG------CCGUU- -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 16148 | 0.74 | 0.14168 |
Target: 5'- gCGGCCGCacGCUgAUGGUgGugGGCGu -3' miRNA: 3'- -GCCGGCGa-CGAgUACUAgCugCCGUu -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 17067 | 0.67 | 0.402103 |
Target: 5'- gGGgCGCUGC-CGg---CGGCGGCAAa -3' miRNA: 3'- gCCgGCGACGaGUacuaGCUGCCGUU- -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 18572 | 0.69 | 0.308132 |
Target: 5'- aGGCCGC-GCUCGcGGU-GACGGCc- -3' miRNA: 3'- gCCGGCGaCGAGUaCUAgCUGCCGuu -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 18795 | 0.73 | 0.167474 |
Target: 5'- aGGCCGCcaccuUGUUgGUGAUCuGGCGGCGc -3' miRNA: 3'- gCCGGCG-----ACGAgUACUAG-CUGCCGUu -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 19501 | 0.7 | 0.271305 |
Target: 5'- aGGCCGCUGCgaacCGUGGUCuugugcuCGGUGAa -3' miRNA: 3'- gCCGGCGACGa---GUACUAGcu-----GCCGUU- -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 22397 | 0.66 | 0.460471 |
Target: 5'- gCGGgCGCUGC-CAaGAcCGAgGGCGAc -3' miRNA: 3'- -GCCgGCGACGaGUaCUaGCUgCCGUU- -5' |
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26810 | 3' | -57.8 | NC_005808.1 | + | 25164 | 0.76 | 0.100708 |
Target: 5'- cCGGCC-CUcGCUCGUGGUCGGCGGg-- -3' miRNA: 3'- -GCCGGcGA-CGAGUACUAGCUGCCguu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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