miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26811 3' -53.6 NC_005808.1 + 41943 1.09 0.000931
Target:  5'- cAGAAACACCAAAAGCCCCCGCCUGACc -3'
miRNA:   3'- -UCUUUGUGGUUUUCGGGGGCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 1741 0.76 0.208142
Target:  5'- uAGAugAACACCGGGcggucauggccGGCCUgCGCCUGGCg -3'
miRNA:   3'- -UCU--UUGUGGUUU-----------UCGGGgGCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 39185 0.72 0.371054
Target:  5'- uAGcgGgGCCGAAAGgCCCCGCCaaGGCa -3'
miRNA:   3'- -UCuuUgUGGUUUUCgGGGGCGGa-CUG- -5'
26811 3' -53.6 NC_005808.1 + 38141 0.71 0.399038
Target:  5'- aAGGAACuggaAGAAGCCgCaCGCCUGGCg -3'
miRNA:   3'- -UCUUUGugg-UUUUCGGgG-GCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 20107 0.71 0.428337
Target:  5'- cGGGcAugACCAGcccAGCCCgccccugguuCCGCCUGACa -3'
miRNA:   3'- -UCU-UugUGGUUu--UCGGG----------GGCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 34613 0.7 0.448561
Target:  5'- --cGACGCCGugguGCUgCUGCCUGACg -3'
miRNA:   3'- ucuUUGUGGUuuu-CGGgGGCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 28228 0.7 0.458868
Target:  5'- cGcgGCGCgGAu-GCCCCCGCCUuccagGACa -3'
miRNA:   3'- uCuuUGUGgUUuuCGGGGGCGGA-----CUG- -5'
26811 3' -53.6 NC_005808.1 + 10015 0.7 0.479854
Target:  5'- ---cGCGCCc--GGCCCCCGcCCUGGu -3'
miRNA:   3'- ucuuUGUGGuuuUCGGGGGC-GGACUg -5'
26811 3' -53.6 NC_005808.1 + 36204 0.7 0.479854
Target:  5'- cGAcuACACCGGGccggccGGCCUgCGCCUGAUu -3'
miRNA:   3'- uCUu-UGUGGUUU------UCGGGgGCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 10689 0.69 0.512177
Target:  5'- cGAAACGCCGcAGGCaCUCgGCCUcGAUg -3'
miRNA:   3'- uCUUUGUGGUuUUCG-GGGgCGGA-CUG- -5'
26811 3' -53.6 NC_005808.1 + 20536 0.69 0.523153
Target:  5'- cAGaAAGCGCCAcacgaugcGgcGCCCCCGCUUGcuGCu -3'
miRNA:   3'- -UC-UUUGUGGU--------UuuCGGGGGCGGAC--UG- -5'
26811 3' -53.6 NC_005808.1 + 21979 0.69 0.523153
Target:  5'- cAGGccGACACCGAccuGCgaCgCCGCCUGGCg -3'
miRNA:   3'- -UCU--UUGUGGUUuu-CGg-G-GGCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 38005 0.69 0.534217
Target:  5'- --cGAgGCCGAGcAGUUCCuCGCCUGGCg -3'
miRNA:   3'- ucuUUgUGGUUU-UCGGGG-GCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 37049 0.68 0.553211
Target:  5'- cGAAGCcaugcgcgugauugACCAGAAGCUgCCGgCCUGGa -3'
miRNA:   3'- uCUUUG--------------UGGUUUUCGGgGGC-GGACUg -5'
26811 3' -53.6 NC_005808.1 + 28381 0.68 0.556584
Target:  5'- ---cGCGCCAagGAAGCCgCgcugCGCCUGACc -3'
miRNA:   3'- ucuuUGUGGU--UUUCGGgG----GCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 41333 0.68 0.56787
Target:  5'- cGGGAAUACC---GGCgCUCGCCgGACg -3'
miRNA:   3'- -UCUUUGUGGuuuUCGgGGGCGGaCUG- -5'
26811 3' -53.6 NC_005808.1 + 7163 0.68 0.56787
Target:  5'- uGAAGC-CCA--GGCCCgaCGCgCUGACg -3'
miRNA:   3'- uCUUUGuGGUuuUCGGGg-GCG-GACUG- -5'
26811 3' -53.6 NC_005808.1 + 10123 0.68 0.579213
Target:  5'- cGGgcGCAUCGGccGCCCCCaCCUcGGCa -3'
miRNA:   3'- -UCuuUGUGGUUuuCGGGGGcGGA-CUG- -5'
26811 3' -53.6 NC_005808.1 + 31685 0.68 0.602031
Target:  5'- -cAAGCACCAGuaacuGCUgcagcaCCGCCUGACc -3'
miRNA:   3'- ucUUUGUGGUUuu---CGGg-----GGCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 11576 0.67 0.613488
Target:  5'- cGAAGCcauGCCGcccAGGGCCgCCGgCUGGCc -3'
miRNA:   3'- uCUUUG---UGGU---UUUCGGgGGCgGACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.