miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26813 3' -52.4 NC_005808.1 + 25225 0.66 0.71977
Target:  5'- gGCGcgAUGCaGGCAUACCUGuCGCagGCg -3'
miRNA:   3'- aUGUugUACG-CCGUAUGGAU-GCGg-UG- -5'
26813 3' -52.4 NC_005808.1 + 8452 0.66 0.718638
Target:  5'- cGCGAUGU-CGGCGUcgaggugGCCUGCgauGCCGCa -3'
miRNA:   3'- aUGUUGUAcGCCGUA-------UGGAUG---CGGUG- -5'
26813 3' -52.4 NC_005808.1 + 14382 0.66 0.717507
Target:  5'- cGCGugGUcgucggcGUGGCcgACCUggacaagGCGCCGCa -3'
miRNA:   3'- aUGUugUA-------CGCCGuaUGGA-------UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 33810 0.67 0.708416
Target:  5'- -cCGGC--GCGGCcgACCcaucgUGCGCCGCg -3'
miRNA:   3'- auGUUGuaCGCCGuaUGG-----AUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 14888 0.67 0.708416
Target:  5'- cAUGACcgGCGGCGaGCCgcUGCCGg -3'
miRNA:   3'- aUGUUGuaCGCCGUaUGGauGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 37137 0.67 0.704993
Target:  5'- aACGACc-GCGGCGUgauggucgauaccgACCUcgcccACGCCGCc -3'
miRNA:   3'- aUGUUGuaCGCCGUA--------------UGGA-----UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 32902 0.67 0.696978
Target:  5'- gACAACAagaacUGCGGCcacgGCCUGCacgGCgGCu -3'
miRNA:   3'- aUGUUGU-----ACGCCGua--UGGAUG---CGgUG- -5'
26813 3' -52.4 NC_005808.1 + 37452 0.67 0.696978
Target:  5'- aGCAGCGa-CGGCc-GCCUGCGCgGCa -3'
miRNA:   3'- aUGUUGUacGCCGuaUGGAUGCGgUG- -5'
26813 3' -52.4 NC_005808.1 + 18465 0.67 0.696978
Target:  5'- cGCGGCGccgGCGGCGUcgGCCgauuCGuCCACc -3'
miRNA:   3'- aUGUUGUa--CGCCGUA--UGGau--GC-GGUG- -5'
26813 3' -52.4 NC_005808.1 + 12235 0.67 0.685469
Target:  5'- cUACAGCA-GCGGCGgguUCUcGCGCgACg -3'
miRNA:   3'- -AUGUUGUaCGCCGUau-GGA-UGCGgUG- -5'
26813 3' -52.4 NC_005808.1 + 34329 0.67 0.673903
Target:  5'- gAUAGCGUGCGuCAgaucgaacACCUGgGCCGCu -3'
miRNA:   3'- aUGUUGUACGCcGUa-------UGGAUgCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 14023 0.67 0.673903
Target:  5'- cGCuGCcgGUGGCcgACgUgcGCGCCGCg -3'
miRNA:   3'- aUGuUGuaCGCCGuaUGgA--UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 21993 0.67 0.673903
Target:  5'- cGCAGCGUGCGGguU-UCgucgGCGCCu- -3'
miRNA:   3'- aUGUUGUACGCCguAuGGa---UGCGGug -5'
26813 3' -52.4 NC_005808.1 + 21453 0.67 0.673903
Target:  5'- cUGCGGCGgggGCGGCAggauguugGCCU-CGaCCAUg -3'
miRNA:   3'- -AUGUUGUa--CGCCGUa-------UGGAuGC-GGUG- -5'
26813 3' -52.4 NC_005808.1 + 30083 0.67 0.662293
Target:  5'- -----uGUGCGGC--GCCcggGCGCCACg -3'
miRNA:   3'- auguugUACGCCGuaUGGa--UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 36701 0.67 0.662293
Target:  5'- gGCGGCAcacucaccacGCuGGCG-ACCUAUGCCACu -3'
miRNA:   3'- aUGUUGUa---------CG-CCGUaUGGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 210 0.68 0.650651
Target:  5'- aGCAuCAUgGUGGCGUAggUAUGCCGCa -3'
miRNA:   3'- aUGUuGUA-CGCCGUAUggAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 10959 0.68 0.650651
Target:  5'- aGCGGCA--CGGUAUGCCUugagcccUGCCACg -3'
miRNA:   3'- aUGUUGUacGCCGUAUGGAu------GCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 14519 0.68 0.63899
Target:  5'- aUACGACGccGCGGCc-ACCUGC-CCGCu -3'
miRNA:   3'- -AUGUUGUa-CGCCGuaUGGAUGcGGUG- -5'
26813 3' -52.4 NC_005808.1 + 27749 0.68 0.63899
Target:  5'- -cCAGCGUGCGGC--GCUggcCGCCAa -3'
miRNA:   3'- auGUUGUACGCCGuaUGGau-GCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.