Results 1 - 20 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 32590 | 0.74 | 0.151051 |
Target: 5'- ---gGGCGGGGGccgGGCGCgCGGCAcuUUCg -3' miRNA: 3'- acuaCCGCCCCUa--CUGCG-GCCGU--AAG- -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 5437 | 0.67 | 0.45147 |
Target: 5'- gGAUGGCGGcguGGgcGAgGUCGGUAUc- -3' miRNA: 3'- aCUACCGCC---CCuaCUgCGGCCGUAag -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 10261 | 0.67 | 0.441577 |
Target: 5'- cGAccugGGCGGcGGuugucggGACGCCGGCc--- -3' miRNA: 3'- aCUa---CCGCC-CCua-----CUGCGGCCGuaag -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 18837 | 0.67 | 0.422166 |
Target: 5'- ---cGGCGcaucGGcccGGUGGCGCCGGCAUg- -3' miRNA: 3'- acuaCCGC----CC---CUACUGCGGCCGUAag -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 20093 | 0.68 | 0.375969 |
Target: 5'- ----uGCGGGGAUGAUGgCgGGCAUg- -3' miRNA: 3'- acuacCGCCCCUACUGC-GgCCGUAag -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 34814 | 0.69 | 0.333308 |
Target: 5'- ---gGGCGGcgaaGGGUgGACGCCGGCGc-- -3' miRNA: 3'- acuaCCGCC----CCUA-CUGCGGCCGUaag -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 16086 | 0.7 | 0.301813 |
Target: 5'- -cGUGGCGGuGaAUGAUGCCGGCuugCg -3' miRNA: 3'- acUACCGCC-CcUACUGCGGCCGuaaG- -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 8601 | 0.71 | 0.252313 |
Target: 5'- cGAccGUGGGGAUGGCGuaGGCGUg- -3' miRNA: 3'- aCUacCGCCCCUACUGCggCCGUAag -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 10293 | 0.72 | 0.233232 |
Target: 5'- uUGAUGGCGGcGAUGAgGUCGcGCAa-- -3' miRNA: 3'- -ACUACCGCCcCUACUgCGGC-CGUaag -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 4621 | 0.73 | 0.183177 |
Target: 5'- aUGAUgucGGCGGGGAUGcugggccacgcuGCGUCGGCcaUCg -3' miRNA: 3'- -ACUA---CCGCCCCUAC------------UGCGGCCGuaAG- -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 32068 | 0.74 | 0.155306 |
Target: 5'- -cGUGGCGGcGGAaagcGugGCCGGCggUCa -3' miRNA: 3'- acUACCGCC-CCUa---CugCGGCCGuaAG- -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 21259 | 0.66 | 0.523827 |
Target: 5'- cGuUGGCaaccuGGGcGcgGugGCCGGCAUc- -3' miRNA: 3'- aCuACCG-----CCC-CuaCugCGGCCGUAag -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 17297 | 0.66 | 0.471613 |
Target: 5'- cGGUGGCaGGGccGGcCGCacgaccucaaGGCAUUCg -3' miRNA: 3'- aCUACCGcCCCuaCU-GCGg---------CCGUAAG- -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 8164 | 0.66 | 0.513194 |
Target: 5'- cGAUGauGCGGcccaGGAaGGCGCUGGCGUc- -3' miRNA: 3'- aCUAC--CGCC----CCUaCUGCGGCCGUAag -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 37056 | 0.66 | 0.514253 |
Target: 5'- -cGUGGCGGGcGAccugggcggaaccugGGCgGCCGGCGUg- -3' miRNA: 3'- acUACCGCCC-CUa--------------CUG-CGGCCGUAag -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 7624 | 0.66 | 0.50265 |
Target: 5'- gUGAUGGUcaGGGGgcGcggcucgacccACGCCGGCu--- -3' miRNA: 3'- -ACUACCG--CCCCuaC-----------UGCGGCCGuaag -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 29327 | 0.66 | 0.471613 |
Target: 5'- ---aGGCGGuGGcgGuCGCCGGCcaagUCc -3' miRNA: 3'- acuaCCGCC-CCuaCuGCGGCCGua--AG- -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 15141 | 0.67 | 0.431808 |
Target: 5'- aUGcUGGCGGcGGAUG-CGCCcagGGCGa-- -3' miRNA: 3'- -ACuACCGCC-CCUACuGCGG---CCGUaag -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 8638 | 0.69 | 0.349937 |
Target: 5'- cGGUGGCGaGGu---CGCCGGCcUUCa -3' miRNA: 3'- aCUACCGCcCCuacuGCGGCCGuAAG- -5' |
|||||||
26813 | 5' | -57.5 | NC_005808.1 | + | 28617 | 0.72 | 0.204138 |
Target: 5'- uUGAaccgGGCGcGGAUGAgGCCGGCcaGUUCc -3' miRNA: 3'- -ACUa---CCGCcCCUACUgCGGCCG--UAAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home