miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26814 3' -68.1 NC_005809.1 + 27441 0.67 0.139212
Target:  5'- cGGCGGCCgcaGGCCcuGGCGCugguaugccagcgCGCCGc-- -3'
miRNA:   3'- cCCGCCGGg--CCGG--CCGCG-------------GCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 27503 0.72 0.053679
Target:  5'- cGGCGGCCuCGGCCgccagcuucucGGCGCgGUCGg-- -3'
miRNA:   3'- cCCGCCGG-GCCGG-----------CCGCGgCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 27692 0.66 0.171245
Target:  5'- uGGaauacaGGCCgCGcGCCGGCagcggcucGCCGCCGg-- -3'
miRNA:   3'- cCCg-----CCGG-GC-CGGCCG--------CGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 27839 0.75 0.03112
Target:  5'- cGGUGGCgCCGGCC-GCGCCGCUGc-- -3'
miRNA:   3'- cCCGCCG-GGCCGGcCGCGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 28243 0.66 0.175628
Target:  5'- -aGCaGGCCCGGCaguucagccaaGGCGCgCGCCa--- -3'
miRNA:   3'- ccCG-CCGGGCCGg----------CCGCG-GCGGcauc -5'
26814 3' -68.1 NC_005809.1 + 28672 0.66 0.158677
Target:  5'- cGGCGGCCUcGCCaGCGCgGCgCGc-- -3'
miRNA:   3'- cCCGCCGGGcCGGcCGCGgCG-GCauc -5'
26814 3' -68.1 NC_005809.1 + 29088 0.66 0.16696
Target:  5'- cGGGCgccgaggucaGGCCCGuGCgGGacuuGCUGCCGg-- -3'
miRNA:   3'- -CCCG----------CCGGGC-CGgCCg---CGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 29133 0.67 0.143216
Target:  5'- aGGCcGCCaaGCUGGCGggcCUGCCGUGGg -3'
miRNA:   3'- cCCGcCGGgcCGGCCGC---GGCGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 30547 0.68 0.107557
Target:  5'- uGGGCaagaccucgccGGCCaCGGCC-GCGCUGCUGg-- -3'
miRNA:   3'- -CCCG-----------CCGG-GCCGGcCGCGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 30728 0.66 0.158677
Target:  5'- gGGGUucGCCCaGGCCaaccgcGGCGCgGCCGg-- -3'
miRNA:   3'- -CCCGc-CGGG-CCGG------CCGCGgCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 30985 0.66 0.154676
Target:  5'- cGGCGGCCa-GCCGGCgGCC-CUGg-- -3'
miRNA:   3'- cCCGCCGGgcCGGCCG-CGGcGGCauc -5'
26814 3' -68.1 NC_005809.1 + 31047 0.67 0.12881
Target:  5'- cGGGCcaacgugcgcgaaGGCCCgaacaucaggGGCCuGGUGCCGCUGc-- -3'
miRNA:   3'- -CCCG-------------CCGGG----------CCGG-CCGCGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 31315 0.67 0.129145
Target:  5'- uGGUGGCCCGGCUGGaaucccagGUCGCgGc-- -3'
miRNA:   3'- cCCGCCGGGCCGGCCg-------CGGCGgCauc -5'
26814 3' -68.1 NC_005809.1 + 31877 0.67 0.146947
Target:  5'- --uCGGCCgaGGCCGugcGCGCUGCCGUcaAGa -3'
miRNA:   3'- cccGCCGGg-CCGGC---CGCGGCGGCA--UC- -5'
26814 3' -68.1 NC_005809.1 + 32090 0.67 0.136013
Target:  5'- --aCGGCCCguucgGGCCGGUGCUGCgCGa-- -3'
miRNA:   3'- cccGCCGGG-----CCGGCCGCGGCG-GCauc -5'
26814 3' -68.1 NC_005809.1 + 32913 0.66 0.175628
Target:  5'- -uGCGGCCaCGGCCuGCacgGCUGCUGUu- -3'
miRNA:   3'- ccCGCCGG-GCCGGcCG---CGGCGGCAuc -5'
26814 3' -68.1 NC_005809.1 + 33186 0.66 0.154676
Target:  5'- uGGGCGcCCuCGGCaCGGCcaCCGCUGgcGa -3'
miRNA:   3'- -CCCGCcGG-GCCG-GCCGc-GGCGGCauC- -5'
26814 3' -68.1 NC_005809.1 + 33355 0.67 0.136013
Target:  5'- cGGGCGcGCCgcagaacgUGcGCC-GCGCCGCCGa-- -3'
miRNA:   3'- -CCCGC-CGG--------GC-CGGcCGCGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 35332 0.7 0.073572
Target:  5'- uGGGCGGCCgacaucgccgagggUGaGCgCGGCGCagaugcuGCCGUGGa -3'
miRNA:   3'- -CCCGCCGG--------------GC-CG-GCCGCGg------CGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 36172 0.7 0.084761
Target:  5'- uGGGCcgcgacuacaccGGgCCGGCCGGCcugcgccugauuGCCGaCGUGGg -3'
miRNA:   3'- -CCCG------------CCgGGCCGGCCG------------CGGCgGCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.