miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26814 3' -68.1 NC_005809.1 + 41887 1.09 0.000049
Target:  5'- uGGGCGGCCCGGCCGGCGCCGCCGUAGg -3'
miRNA:   3'- -CCCGCCGGGCCGGCCGCGGCGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 688 0.8 0.013248
Target:  5'- cGGCGGCgCCGGCCGG-GCCGCCcaAGa -3'
miRNA:   3'- cCCGCCG-GGCCGGCCgCGGCGGcaUC- -5'
26814 3' -68.1 NC_005809.1 + 14738 0.77 0.020046
Target:  5'- -aGCGGCgCGGCCGGCGCCaCCGcGGg -3'
miRNA:   3'- ccCGCCGgGCCGGCCGCGGcGGCaUC- -5'
26814 3' -68.1 NC_005809.1 + 27839 0.75 0.03112
Target:  5'- cGGUGGCgCCGGCC-GCGCCGCUGc-- -3'
miRNA:   3'- cCCGCCG-GGCCGGcCGCGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 18825 0.74 0.042035
Target:  5'- cGGUGGCgCCGGCaUGGCGCUGCUGc-- -3'
miRNA:   3'- cCCGCCG-GGCCG-GCCGCGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 41602 0.73 0.043196
Target:  5'- aGGCGGCCaaguGGCUGcaaGCUGCCGUGGg -3'
miRNA:   3'- cCCGCCGGg---CCGGCcg-CGGCGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 37003 0.72 0.050847
Target:  5'- uGGCGGCCaGcGuuGGCGCCGUCGa-- -3'
miRNA:   3'- cCCGCCGGgC-CggCCGCGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 27503 0.72 0.053679
Target:  5'- cGGCGGCCuCGGCCgccagcuucucGGCGCgGUCGg-- -3'
miRNA:   3'- cCCGCCGG-GCCGG-----------CCGCGgCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 5100 0.72 0.05981
Target:  5'- cGGcCGGCCCagcguccggugcGGCUGGCGCCGuuGa-- -3'
miRNA:   3'- cCC-GCCGGG------------CCGGCCGCGGCggCauc -5'
26814 3' -68.1 NC_005809.1 + 24302 0.71 0.070294
Target:  5'- gGGGCGGUgaGGUCGGCGagcaGCCGcGGg -3'
miRNA:   3'- -CCCGCCGggCCGGCCGCgg--CGGCaUC- -5'
26814 3' -68.1 NC_005809.1 + 24098 0.71 0.070294
Target:  5'- cGGUGGacgaaUCGGCCGaCGCCGCCGgcGc -3'
miRNA:   3'- cCCGCCg----GGCCGGCcGCGGCGGCauC- -5'
26814 3' -68.1 NC_005809.1 + 1752 0.71 0.072205
Target:  5'- cGGGCGGUcauggCCGGCCuGCGCCuggcgcgucggGCCGa-- -3'
miRNA:   3'- -CCCGCCG-----GGCCGGcCGCGG-----------CGGCauc -5'
26814 3' -68.1 NC_005809.1 + 35332 0.7 0.073572
Target:  5'- uGGGCGGCCgacaucgccgagggUGaGCgCGGCGCagaugcuGCCGUGGa -3'
miRNA:   3'- -CCCGCCGG--------------GC-CG-GCCGCGg------CGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 4804 0.7 0.074166
Target:  5'- cGGCuGGCgcugcgggauugCUGGCCGGCgacagGUCGCCGUAGu -3'
miRNA:   3'- cCCG-CCG------------GGCCGGCCG-----CGGCGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 10206 0.7 0.08036
Target:  5'- uGGGCGGCCgGGgccUCGGCGgCGaCCGcAGc -3'
miRNA:   3'- -CCCGCCGGgCC---GGCCGCgGC-GGCaUC- -5'
26814 3' -68.1 NC_005809.1 + 41296 0.7 0.082533
Target:  5'- uGGGUcgagGGCCgGGaauaCCGGCGCuCGCCGg-- -3'
miRNA:   3'- -CCCG----CCGGgCC----GGCCGCG-GCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 36172 0.7 0.084761
Target:  5'- uGGGCcgcgacuacaccGGgCCGGCCGGCcugcgccugauuGCCGaCGUGGg -3'
miRNA:   3'- -CCCG------------CCgGGCCGGCCG------------CGGCgGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 6389 0.69 0.089392
Target:  5'- aGGCGcaGgCCGGCCGGC-CCGgUGUAGu -3'
miRNA:   3'- cCCGC--CgGGCCGGCCGcGGCgGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 16760 0.69 0.092775
Target:  5'- cGGCGGCCCGGugcagaucaacgauaCCGagcGCGCCGCgCGc-- -3'
miRNA:   3'- cCCGCCGGGCC---------------GGC---CGCGGCG-GCauc -5'
26814 3' -68.1 NC_005809.1 + 42416 0.69 0.094012
Target:  5'- gGGGCGcauccGCCUGcggggaaGCCuGGCGCCacGCCGUAGc -3'
miRNA:   3'- -CCCGC-----CGGGC-------CGG-CCGCGG--CGGCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.