Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26814 | 3' | -68.1 | NC_005809.1 | + | 27441 | 0.67 | 0.139212 |
Target: 5'- cGGCGGCCgcaGGCCcuGGCGCugguaugccagcgCGCCGc-- -3' miRNA: 3'- cCCGCCGGg--CCGG--CCGCG-------------GCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 18465 | 0.68 | 0.119441 |
Target: 5'- -cGCGGCgCCGG-CGGCGUCgGCCGa-- -3' miRNA: 3'- ccCGCCG-GGCCgGCCGCGG-CGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 40548 | 0.68 | 0.122598 |
Target: 5'- aGGCGGCCgGuauGCCGGUGCUGgUGgcGu -3' miRNA: 3'- cCCGCCGGgC---CGGCCGCGGCgGCauC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 19872 | 0.68 | 0.122598 |
Target: 5'- cGGGCGuGCCgaaGGCguCGcGCGCCuucuugGCCGUGGc -3' miRNA: 3'- -CCCGC-CGGg--CCG--GC-CGCGG------CGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 25801 | 0.67 | 0.127147 |
Target: 5'- cGGCGcGCUCGGuaucguugaucugcaCCGG-GCCGCCGUu- -3' miRNA: 3'- cCCGC-CGGGCC---------------GGCCgCGGCGGCAuc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 31047 | 0.67 | 0.12881 |
Target: 5'- cGGGCcaacgugcgcgaaGGCCCgaacaucaggGGCCuGGUGCCGCUGc-- -3' miRNA: 3'- -CCCG-------------CCGGG----------CCGG-CCGCGGCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 31315 | 0.67 | 0.129145 |
Target: 5'- uGGUGGCCCGGCUGGaaucccagGUCGCgGc-- -3' miRNA: 3'- cCCGCCGGGCCGGCCg-------CGGCGgCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 1031 | 0.67 | 0.132538 |
Target: 5'- uGGaaGGCCaCGGCCGGCggcagcauGUCGCCGc-- -3' miRNA: 3'- -CCcgCCGG-GCCGGCCG--------CGGCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 7636 | 0.67 | 0.136013 |
Target: 5'- gGGcGCGGCUCGacccacGCCGGCuCCuuGCCGUAc -3' miRNA: 3'- -CC-CGCCGGGC------CGGCCGcGG--CGGCAUc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 25507 | 0.68 | 0.116056 |
Target: 5'- aGGGUcaGGCCCgcgaugaGGUCGGUuuuGCCGCCGc-- -3' miRNA: 3'- -CCCG--CCGGG-------CCGGCCG---CGGCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 13187 | 0.68 | 0.11042 |
Target: 5'- uGGGC-GCCCuuGGCCGGCGUuguaCGCCu--- -3' miRNA: 3'- -CCCGcCGGG--CCGGCCGCG----GCGGcauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 1314 | 0.68 | 0.107557 |
Target: 5'- aGGGCgacGGCCaccaGGCCGacaaGCGCgaggaaGCCGUGGu -3' miRNA: 3'- -CCCG---CCGGg---CCGGC----CGCGg-----CGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 27839 | 0.75 | 0.03112 |
Target: 5'- cGGUGGCgCCGGCC-GCGCCGCUGc-- -3' miRNA: 3'- cCCGCCG-GGCCGGcCGCGGCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 27503 | 0.72 | 0.053679 |
Target: 5'- cGGCGGCCuCGGCCgccagcuucucGGCGCgGUCGg-- -3' miRNA: 3'- cCCGCCGG-GCCGG-----------CCGCGgCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 24302 | 0.71 | 0.070294 |
Target: 5'- gGGGCGGUgaGGUCGGCGagcaGCCGcGGg -3' miRNA: 3'- -CCCGCCGggCCGGCCGCgg--CGGCaUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 4804 | 0.7 | 0.074166 |
Target: 5'- cGGCuGGCgcugcgggauugCUGGCCGGCgacagGUCGCCGUAGu -3' miRNA: 3'- cCCG-CCG------------GGCCGGCCG-----CGGCGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 41296 | 0.7 | 0.082533 |
Target: 5'- uGGGUcgagGGCCgGGaauaCCGGCGCuCGCCGg-- -3' miRNA: 3'- -CCCG----CCGGgCC----GGCCGCG-GCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 6389 | 0.69 | 0.089392 |
Target: 5'- aGGCGcaGgCCGGCCGGC-CCGgUGUAGu -3' miRNA: 3'- cCCGC--CgGGCCGGCCGcGGCgGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 13324 | 0.69 | 0.094262 |
Target: 5'- aGGCGGCguaggcuuUCGGCaGGuCGCCGCCGa-- -3' miRNA: 3'- cCCGCCG--------GGCCGgCC-GCGGCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 24575 | 0.69 | 0.09679 |
Target: 5'- aGGcCGGCCaCGGUCGG-GCCGuCCGgcGu -3' miRNA: 3'- cCC-GCCGG-GCCGGCCgCGGC-GGCauC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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