Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26814 | 3' | -68.1 | NC_005809.1 | + | 41887 | 1.09 | 0.000049 |
Target: 5'- uGGGCGGCCCGGCCGGCGCCGCCGUAGg -3' miRNA: 3'- -CCCGCCGGGCCGGCCGCGGCGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 1870 | 0.68 | 0.119441 |
Target: 5'- aGGUucaGCCCguGGCCGGCGCUgGCCGg-- -3' miRNA: 3'- cCCGc--CGGG--CCGGCCGCGG-CGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 40135 | 0.67 | 0.132538 |
Target: 5'- -cGUGGCgCCgaucuucgaGGCCGGCcuGCUGCCGUAc -3' miRNA: 3'- ccCGCCG-GG---------CCGGCCG--CGGCGGCAUc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 28243 | 0.66 | 0.175628 |
Target: 5'- -aGCaGGCCCGGCaguucagccaaGGCGCgCGCCa--- -3' miRNA: 3'- ccCG-CCGGGCCGg----------CCGCG-GCGGcauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 37003 | 0.72 | 0.050847 |
Target: 5'- uGGCGGCCaGcGuuGGCGCCGUCGa-- -3' miRNA: 3'- cCCGCCGGgC-CggCCGCGGCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 5100 | 0.72 | 0.05981 |
Target: 5'- cGGcCGGCCCagcguccggugcGGCUGGCGCCGuuGa-- -3' miRNA: 3'- cCC-GCCGGG------------CCGGCCGCGGCggCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 1752 | 0.71 | 0.072205 |
Target: 5'- cGGGCGGUcauggCCGGCCuGCGCCuggcgcgucggGCCGa-- -3' miRNA: 3'- -CCCGCCG-----GGCCGGcCGCGG-----------CGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 35332 | 0.7 | 0.073572 |
Target: 5'- uGGGCGGCCgacaucgccgagggUGaGCgCGGCGCagaugcuGCCGUGGa -3' miRNA: 3'- -CCCGCCGG--------------GC-CG-GCCGCGg------CGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 16760 | 0.69 | 0.092775 |
Target: 5'- cGGCGGCCCGGugcagaucaacgauaCCGagcGCGCCGCgCGc-- -3' miRNA: 3'- cCCGCCGGGCC---------------GGC---CGCGGCG-GCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 30547 | 0.68 | 0.107557 |
Target: 5'- uGGGCaagaccucgccGGCCaCGGCC-GCGCUGCUGg-- -3' miRNA: 3'- -CCCG-----------CCGG-GCCGGcCGCGGCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 4808 | 0.69 | 0.094262 |
Target: 5'- aGGCcagcuuguagaGGUCgGgGCCGGCGCCGUCGUc- -3' miRNA: 3'- cCCG-----------CCGGgC-CGGCCGCGGCGGCAuc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 36172 | 0.7 | 0.084761 |
Target: 5'- uGGGCcgcgacuacaccGGgCCGGCCGGCcugcgccugauuGCCGaCGUGGg -3' miRNA: 3'- -CCCG------------CCgGGCCGGCCG------------CGGCgGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 14738 | 0.77 | 0.020046 |
Target: 5'- -aGCGGCgCGGCCGGCGCCaCCGcGGg -3' miRNA: 3'- ccCGCCGgGCCGGCCGCGGcGGCaUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 16947 | 0.69 | 0.099382 |
Target: 5'- aGGUGGacgcgcugCUGGCgCcGCGCCGCCGUGGu -3' miRNA: 3'- cCCGCCg-------GGCCG-GcCGCGGCGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 18825 | 0.74 | 0.042035 |
Target: 5'- cGGUGGCgCCGGCaUGGCGCUGCUGc-- -3' miRNA: 3'- cCCGCCG-GGCCG-GCCGCGGCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 10206 | 0.7 | 0.08036 |
Target: 5'- uGGGCGGCCgGGgccUCGGCGgCGaCCGcAGc -3' miRNA: 3'- -CCCGCCGGgCC---GGCCGCgGC-GGCaUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 15233 | 0.69 | 0.10285 |
Target: 5'- aGGuCGGCCCGGCCuacguggaaagcaacGcGCGCCugugggcGUCGUGGg -3' miRNA: 3'- cCC-GCCGGGCCGG---------------C-CGCGG-------CGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 8170 | 0.67 | 0.125832 |
Target: 5'- -uGCGGCCCaGGaaGGCGCUGgCGUc- -3' miRNA: 3'- ccCGCCGGG-CCggCCGCGGCgGCAuc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 41602 | 0.73 | 0.043196 |
Target: 5'- aGGCGGCCaaguGGCUGcaaGCUGCCGUGGg -3' miRNA: 3'- cCCGCCGGg---CCGGCcg-CGGCGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 24098 | 0.71 | 0.070294 |
Target: 5'- cGGUGGacgaaUCGGCCGaCGCCGCCGgcGc -3' miRNA: 3'- cCCGCCg----GGCCGGCcGCGGCGGCauC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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