miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26815 5' -58.2 NC_005809.1 + 41734 1.08 0.000406
Target:  5'- uCUACACCAACCUGCCCACCUGGCCGAc -3'
miRNA:   3'- -GAUGUGGUUGGACGGGUGGACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 32830 0.82 0.035212
Target:  5'- aCUACACCAGCCgcaacgGCuUCGCCUGGCCGc -3'
miRNA:   3'- -GAUGUGGUUGGa-----CG-GGUGGACCGGCu -5'
26815 5' -58.2 NC_005809.1 + 21960 0.79 0.061501
Target:  5'- -gACACCGACCUGCgacgCCGCCUGG-CGAa -3'
miRNA:   3'- gaUGUGGUUGGACG----GGUGGACCgGCU- -5'
26815 5' -58.2 NC_005809.1 + 23753 0.76 0.094848
Target:  5'- -aGCGCCAuGCCgGCgCCACCgGGCCGAu -3'
miRNA:   3'- gaUGUGGU-UGGaCG-GGUGGaCCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 18266 0.76 0.106304
Target:  5'- cCUGCGCCGagaACUUGCCgGCCgucagcgGGCCGGu -3'
miRNA:   3'- -GAUGUGGU---UGGACGGgUGGa------CCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 38834 0.75 0.115737
Target:  5'- -gGCACCGACgUGCCCACCaccGGCgUGAa -3'
miRNA:   3'- gaUGUGGUUGgACGGGUGGa--CCG-GCU- -5'
26815 5' -58.2 NC_005809.1 + 38464 0.75 0.122109
Target:  5'- -gACgACCGcgacgaauucagcGCC-GCCCACCUGGCCGGc -3'
miRNA:   3'- gaUG-UGGU-------------UGGaCGGGUGGACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 24282 0.74 0.133209
Target:  5'- uUACACCGucgccACCgGCCCGCUgacGGCCGGc -3'
miRNA:   3'- gAUGUGGU-----UGGaCGGGUGGa--CCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 35983 0.74 0.144828
Target:  5'- -gACAaaGACCgcaGCCC-CCUGGCCGAg -3'
miRNA:   3'- gaUGUggUUGGa--CGGGuGGACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 36181 0.74 0.148903
Target:  5'- aCUACACCgGGCCgGCCgGCCUGcGCCuGAu -3'
miRNA:   3'- -GAUGUGG-UUGGaCGGgUGGAC-CGG-CU- -5'
26815 5' -58.2 NC_005809.1 + 23086 0.74 0.153082
Target:  5'- -cGCAgCGGCCUGCCCACC-GGCa-- -3'
miRNA:   3'- gaUGUgGUUGGACGGGUGGaCCGgcu -5'
26815 5' -58.2 NC_005809.1 + 29783 0.73 0.157367
Target:  5'- -cGCACCAGCCUGUCUGa--GGCCGAc -3'
miRNA:   3'- gaUGUGGUUGGACGGGUggaCCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 31284 0.73 0.16176
Target:  5'- ---aACCGuuuuCC-GCCUACCUGGCCGAg -3'
miRNA:   3'- gaugUGGUu---GGaCGGGUGGACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 38208 0.73 0.175608
Target:  5'- gCUGCGCauccGCCUGCCguCC-GGCCGAu -3'
miRNA:   3'- -GAUGUGgu--UGGACGGguGGaCCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 6630 0.73 0.180454
Target:  5'- --cCGCCAGCUUcGCgCGCUUGGCCGGa -3'
miRNA:   3'- gauGUGGUUGGA-CGgGUGGACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 15134 0.71 0.212076
Target:  5'- -aGCGCCAggGCCUGCggCCGCCgGGCgCGGu -3'
miRNA:   3'- gaUGUGGU--UGGACG--GGUGGaCCG-GCU- -5'
26815 5' -58.2 NC_005809.1 + 33258 0.71 0.212076
Target:  5'- -cGCGCCGACgUGCgCCGCCaGGUCGc -3'
miRNA:   3'- gaUGUGGUUGgACG-GGUGGaCCGGCu -5'
26815 5' -58.2 NC_005809.1 + 30556 0.71 0.212076
Target:  5'- cCU-CGCCGGCCacgGCCgcgCugCUGGCCGAc -3'
miRNA:   3'- -GAuGUGGUUGGa--CGG---GugGACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 23288 0.71 0.223042
Target:  5'- gUGCGCCAcgaauGCCUguuugcgGCCgGCaCUGGCCGGg -3'
miRNA:   3'- gAUGUGGU-----UGGA-------CGGgUG-GACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 24701 0.71 0.223632
Target:  5'- uCUGCAauCUGGCCcugGCCUACCUGGgCGAc -3'
miRNA:   3'- -GAUGU--GGUUGGa--CGGGUGGACCgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.