Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26815 | 5' | -58.2 | NC_005809.1 | + | 968 | 0.71 | 0.235719 |
Target: 5'- -cACGgCAGCUUGCagCCACUUGGCCGc -3' miRNA: 3'- gaUGUgGUUGGACG--GGUGGACCGGCu -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 988 | 0.71 | 0.241966 |
Target: 5'- cCUuCACCGucGCCcgcUGCCCGCgccaCUGGCCGGg -3' miRNA: 3'- -GAuGUGGU--UGG---ACGGGUG----GACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 1763 | 0.67 | 0.424905 |
Target: 5'- ---gGCCGGCCUGCgCCugGCgCgucgGGCCGAu -3' miRNA: 3'- gaugUGGUUGGACG-GG--UG-Ga---CCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 1866 | 0.69 | 0.31217 |
Target: 5'- uUGCAgguUCAGCCcgugGCCgGCgCUGGCCGGg -3' miRNA: 3'- gAUGU---GGUUGGa---CGGgUG-GACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 3582 | 0.68 | 0.369908 |
Target: 5'- gUACACCGAUCcGCggCCGCCaguguUGGCCGu -3' miRNA: 3'- gAUGUGGUUGGaCG--GGUGG-----ACCGGCu -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 5508 | 0.67 | 0.415403 |
Target: 5'- -aGCGCCAACUcggUGCCUugguaguuCCaGGCCGGc -3' miRNA: 3'- gaUGUGGUUGG---ACGGGu-------GGaCCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 5575 | 0.66 | 0.484495 |
Target: 5'- -gGCGCCAACgCUGgCCGCCaccGuGUCGAu -3' miRNA: 3'- gaUGUGGUUG-GACgGGUGGa--C-CGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 6630 | 0.73 | 0.180454 |
Target: 5'- --cCGCCAGCUUcGCgCGCUUGGCCGGa -3' miRNA: 3'- gauGUGGUUGGA-CGgGUGGACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 9496 | 0.69 | 0.327942 |
Target: 5'- -cAUGCCAGCCUGuUCCGCCgUGG-CGAa -3' miRNA: 3'- gaUGUGGUUGGAC-GGGUGG-ACCgGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 10914 | 0.71 | 0.235719 |
Target: 5'- -aAUGgCGACCUGCCCGCCgguuugcagGGCCu- -3' miRNA: 3'- gaUGUgGUUGGACGGGUGGa--------CCGGcu -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 10975 | 0.68 | 0.344296 |
Target: 5'- aCUGgGCC-ACCUGUUCgGCCaGGCCGGa -3' miRNA: 3'- -GAUgUGGuUGGACGGG-UGGaCCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 12206 | 0.66 | 0.45417 |
Target: 5'- -cGCGCU-GCCUGCC--CCUGGUCGGg -3' miRNA: 3'- gaUGUGGuUGGACGGguGGACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 12903 | 0.66 | 0.484495 |
Target: 5'- -aACACaCGGCCgcGCCCugCUGGgCa- -3' miRNA: 3'- gaUGUG-GUUGGa-CGGGugGACCgGcu -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 13290 | 0.67 | 0.396794 |
Target: 5'- -aGCGCCGAUUgcaGCgCGCCggGGCCGGc -3' miRNA: 3'- gaUGUGGUUGGa--CGgGUGGa-CCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 13376 | 0.67 | 0.415403 |
Target: 5'- -cGCGuCCGACCUGCCggucauCACCgaGGCCc- -3' miRNA: 3'- gaUGU-GGUUGGACGG------GUGGa-CCGGcu -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 13926 | 0.66 | 0.454171 |
Target: 5'- -gGCACCGAUcuggcaCUGCgCGCggaaCUGGCCGGc -3' miRNA: 3'- gaUGUGGUUG------GACGgGUG----GACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 13999 | 0.69 | 0.304503 |
Target: 5'- gCUGCcggugGCCGACgUGCgCGCCgcgaUGGCCGGc -3' miRNA: 3'- -GAUG-----UGGUUGgACGgGUGG----ACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 14498 | 0.67 | 0.412577 |
Target: 5'- -gACGCCGcggccACCUGCCCGCUguucgagcagaccgUcGCCGAc -3' miRNA: 3'- gaUGUGGU-----UGGACGGGUGG--------------AcCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 14810 | 0.66 | 0.484495 |
Target: 5'- cCUGCACCucggcGGCgCUGCCUucGCCcaGGUCGAu -3' miRNA: 3'- -GAUGUGG-----UUG-GACGGG--UGGa-CCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 15107 | 0.68 | 0.336046 |
Target: 5'- -cGCGCCGuaauAgCUGCCUACCaGGcCCGAc -3' miRNA: 3'- gaUGUGGU----UgGACGGGUGGaCC-GGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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