miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26815 5' -58.2 NC_005809.1 + 15134 0.71 0.212076
Target:  5'- -aGCGCCAggGCCUGCggCCGCCgGGCgCGGu -3'
miRNA:   3'- gaUGUGGU--UGGACG--GGUGGaCCG-GCU- -5'
26815 5' -58.2 NC_005809.1 + 17929 0.69 0.31217
Target:  5'- -aACACCAuCCUgGCCCGCC-GGCaCGc -3'
miRNA:   3'- gaUGUGGUuGGA-CGGGUGGaCCG-GCu -5'
26815 5' -58.2 NC_005809.1 + 17993 0.69 0.31217
Target:  5'- -cACGCCGGacgGCCCgACCgUGGCCGGc -3'
miRNA:   3'- gaUGUGGUUggaCGGG-UGG-ACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 18266 0.76 0.106304
Target:  5'- cCUGCGCCGagaACUUGCCgGCCgucagcgGGCCGGu -3'
miRNA:   3'- -GAUGUGGU---UGGACGGgUGGa------CCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 18567 0.66 0.454171
Target:  5'- aUugGCCGACgC-GCCCACCuucgccagucugUGcGCCGAa -3'
miRNA:   3'- gAugUGGUUG-GaCGGGUGG------------AC-CGGCU- -5'
26815 5' -58.2 NC_005809.1 + 19313 0.69 0.311397
Target:  5'- -gACACCGACCUGaccaugcuguucCCCAgCgaggcgcggucggUGGCCGAg -3'
miRNA:   3'- gaUGUGGUUGGAC------------GGGUgG-------------ACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 19385 0.7 0.281656
Target:  5'- -gAgGCCGACCUGCUgcugucgCACCagcagggGGCCGAa -3'
miRNA:   3'- gaUgUGGUUGGACGG-------GUGGa------CCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 20882 0.67 0.424905
Target:  5'- -aACcUCGACCUGUCgCACCUucuGGCUGAc -3'
miRNA:   3'- gaUGuGGUUGGACGG-GUGGA---CCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 20977 0.69 0.31217
Target:  5'- -gGCACCAAUCcGCagaugaccgCCACCgaagUGGCCGAg -3'
miRNA:   3'- gaUGUGGUUGGaCG---------GGUGG----ACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 21127 0.71 0.235719
Target:  5'- --gUAUCGACgCUGCCCAgCUUGGCCGc -3'
miRNA:   3'- gauGUGGUUG-GACGGGU-GGACCGGCu -5'
26815 5' -58.2 NC_005809.1 + 21960 0.79 0.061501
Target:  5'- -gACACCGACCUGCgacgCCGCCUGG-CGAa -3'
miRNA:   3'- gaUGUGGUUGGACG----GGUGGACCgGCU- -5'
26815 5' -58.2 NC_005809.1 + 22595 0.69 0.32714
Target:  5'- uCUACGCggacaucggCGGCCUGCCCgaaaccuggguuGCCUcguccacGGCCGAc -3'
miRNA:   3'- -GAUGUG---------GUUGGACGGG------------UGGA-------CCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 22787 0.67 0.419188
Target:  5'- uCUACcggGCCGGCCUGgcaaucagugaagaCCGCCucgUGGCCGGc -3'
miRNA:   3'- -GAUG---UGGUUGGACg-------------GGUGG---ACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 23086 0.74 0.153082
Target:  5'- -cGCAgCGGCCUGCCCACC-GGCa-- -3'
miRNA:   3'- gaUGUgGUUGGACGGGUGGaCCGgcu -5'
26815 5' -58.2 NC_005809.1 + 23288 0.71 0.223042
Target:  5'- gUGCGCCAcgaauGCCUguuugcgGCCgGCaCUGGCCGGg -3'
miRNA:   3'- gAUGUGGU-----UGGA-------CGGgUG-GACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 23753 0.76 0.094848
Target:  5'- -aGCGCCAuGCCgGCgCCACCgGGCCGAu -3'
miRNA:   3'- gaUGUGGU-UGGaCG-GGUGGaCCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 23880 0.67 0.415403
Target:  5'- gCUGCuGCUGACCgagGCCCGCgUgguguaacaGGCCGGg -3'
miRNA:   3'- -GAUG-UGGUUGGa--CGGGUGgA---------CCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 24133 0.7 0.275283
Target:  5'- gUAguCCAGCCggcUGCgCGCCUGGCCc- -3'
miRNA:   3'- gAUguGGUUGG---ACGgGUGGACCGGcu -5'
26815 5' -58.2 NC_005809.1 + 24166 0.67 0.396794
Target:  5'- -aACGCCA-CCUucGCCgACgUGGCCGc -3'
miRNA:   3'- gaUGUGGUuGGA--CGGgUGgACCGGCu -5'
26815 5' -58.2 NC_005809.1 + 24282 0.74 0.133209
Target:  5'- uUACACCGucgccACCgGCCCGCUgacGGCCGGc -3'
miRNA:   3'- gAUGUGGU-----UGGaCGGGUGGa--CCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.