miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26815 5' -58.2 NC_005809.1 + 42103 0.68 0.344296
Target:  5'- -gGCAuCCGACCgcgacagcGCCCGCaagCUGGCCGc -3'
miRNA:   3'- gaUGU-GGUUGGa-------CGGGUG---GACCGGCu -5'
26815 5' -58.2 NC_005809.1 + 41936 0.71 0.237579
Target:  5'- -gGCACCGACUcgacgccggacgccgUGUCCACggcgcugCUGGCCGAc -3'
miRNA:   3'- gaUGUGGUUGG---------------ACGGGUG-------GACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 41734 1.08 0.000406
Target:  5'- uCUACACCAACCUGCCCACCUGGCCGAc -3'
miRNA:   3'- -GAUGUGGUUGGACGGGUGGACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 40470 0.7 0.254872
Target:  5'- uCUAUACCGACgacacgGCgaCCACCUGGgCCGAu -3'
miRNA:   3'- -GAUGUGGUUGga----CG--GGUGGACC-GGCU- -5'
26815 5' -58.2 NC_005809.1 + 40138 0.67 0.415403
Target:  5'- -gGCGCCGAUCUucgagGCCgGCCUGcuGCCGu -3'
miRNA:   3'- gaUGUGGUUGGA-----CGGgUGGAC--CGGCu -5'
26815 5' -58.2 NC_005809.1 + 39982 0.7 0.275283
Target:  5'- cCU-CGCCAACCUGCUgGCCUugcaaGCUGAa -3'
miRNA:   3'- -GAuGUGGUUGGACGGgUGGAc----CGGCU- -5'
26815 5' -58.2 NC_005809.1 + 38834 0.75 0.115737
Target:  5'- -gGCACCGACgUGCCCACCaccGGCgUGAa -3'
miRNA:   3'- gaUGUGGUUGgACGGGUGGa--CCG-GCU- -5'
26815 5' -58.2 NC_005809.1 + 38522 0.7 0.248349
Target:  5'- cCUGgGCCGcugGCCUGCCgcuCGCCgcGGCCGGc -3'
miRNA:   3'- -GAUgUGGU---UGGACGG---GUGGa-CCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 38464 0.75 0.122109
Target:  5'- -gACgACCGcgacgaauucagcGCC-GCCCACCUGGCCGGc -3'
miRNA:   3'- gaUG-UGGU-------------UGGaCGGGUGGACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 38385 0.69 0.327942
Target:  5'- -cGCgGCCAACaUGCCCGCCaucgaggcGGCCGGc -3'
miRNA:   3'- gaUG-UGGUUGgACGGGUGGa-------CCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 38208 0.73 0.175608
Target:  5'- gCUGCGCauccGCCUGCCguCC-GGCCGAu -3'
miRNA:   3'- -GAUGUGgu--UGGACGGguGGaCCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 37949 0.66 0.464167
Target:  5'- cCUGCGgCAGCgCggGCCaacauugGCCUGGCUGAc -3'
miRNA:   3'- -GAUGUgGUUG-Ga-CGGg------UGGACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 37922 0.66 0.464167
Target:  5'- -cGCAaCAACCUGUCCgAUCUuGCCGAc -3'
miRNA:   3'- gaUGUgGUUGGACGGG-UGGAcCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 37750 0.66 0.444293
Target:  5'- aCUACGgCGACCUG-UCGCC-GGCCa- -3'
miRNA:   3'- -GAUGUgGUUGGACgGGUGGaCCGGcu -5'
26815 5' -58.2 NC_005809.1 + 37664 0.67 0.387694
Target:  5'- -cGCuGCCGACgUuUCCACCgUGGCCGAa -3'
miRNA:   3'- gaUG-UGGUUGgAcGGGUGG-ACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 37578 0.68 0.377842
Target:  5'- aCUGCGCCGACCUGCUguuCGCCaacgucaUGGaaCUGAc -3'
miRNA:   3'- -GAUGUGGUUGGACGG---GUGG-------ACC--GGCU- -5'
26815 5' -58.2 NC_005809.1 + 37466 0.67 0.424905
Target:  5'- -gGCGCCAGCC-GCaccggaCGCUgGGCCGGc -3'
miRNA:   3'- gaUGUGGUUGGaCGg-----GUGGaCCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 37328 0.66 0.474276
Target:  5'- -gACcCCGACCUGCCgGCCgaacuGCgCGAa -3'
miRNA:   3'- gaUGuGGUUGGACGGgUGGac---CG-GCU- -5'
26815 5' -58.2 NC_005809.1 + 37133 0.66 0.474276
Target:  5'- -gAUACCGACCUcGCCCACgccGCCa- -3'
miRNA:   3'- gaUGUGGUUGGA-CGGGUGgacCGGcu -5'
26815 5' -58.2 NC_005809.1 + 37040 0.66 0.453177
Target:  5'- aUugACCAGaagCUGCCgGCCUGGaacuaccaaggcaCCGAg -3'
miRNA:   3'- gAugUGGUUg--GACGGgUGGACC-------------GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.