Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26815 | 5' | -58.2 | NC_005809.1 | + | 42103 | 0.68 | 0.344296 |
Target: 5'- -gGCAuCCGACCgcgacagcGCCCGCaagCUGGCCGc -3' miRNA: 3'- gaUGU-GGUUGGa-------CGGGUG---GACCGGCu -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 15107 | 0.68 | 0.336046 |
Target: 5'- -cGCGCCGuaauAgCUGCCUACCaGGcCCGAc -3' miRNA: 3'- gaUGUGGU----UgGACGGGUGGaCC-GGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 9496 | 0.69 | 0.327942 |
Target: 5'- -cAUGCCAGCCUGuUCCGCCgUGG-CGAa -3' miRNA: 3'- gaUGUGGUUGGAC-GGGUGG-ACCgGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 38385 | 0.69 | 0.327942 |
Target: 5'- -cGCgGCCAACaUGCCCGCCaucgaggcGGCCGGc -3' miRNA: 3'- gaUG-UGGUUGgACGGGUGGa-------CCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 22595 | 0.69 | 0.32714 |
Target: 5'- uCUACGCggacaucggCGGCCUGCCCgaaaccuggguuGCCUcguccacGGCCGAc -3' miRNA: 3'- -GAUGUG---------GUUGGACGGG------------UGGA-------CCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 34968 | 0.69 | 0.319983 |
Target: 5'- gCUGCGCgaccaCGugCUGUCCACCgucGCCGAc -3' miRNA: 3'- -GAUGUG-----GUugGACGGGUGGac-CGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 33456 | 0.69 | 0.31217 |
Target: 5'- -aACGCUAucuggcgauACCUGCCCACCggcaagaacGGCCu- -3' miRNA: 3'- gaUGUGGU---------UGGACGGGUGGa--------CCGGcu -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 20977 | 0.69 | 0.31217 |
Target: 5'- -gGCACCAAUCcGCagaugaccgCCACCgaagUGGCCGAg -3' miRNA: 3'- gaUGUGGUUGGaCG---------GGUGG----ACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 1866 | 0.69 | 0.31217 |
Target: 5'- uUGCAgguUCAGCCcgugGCCgGCgCUGGCCGGg -3' miRNA: 3'- gAUGU---GGUUGGa---CGGgUG-GACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 17929 | 0.69 | 0.31217 |
Target: 5'- -aACACCAuCCUgGCCCGCC-GGCaCGc -3' miRNA: 3'- gaUGUGGUuGGA-CGGGUGGaCCG-GCu -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 17993 | 0.69 | 0.31217 |
Target: 5'- -cACGCCGGacgGCCCgACCgUGGCCGGc -3' miRNA: 3'- gaUGUGGUUggaCGGG-UGG-ACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 19313 | 0.69 | 0.311397 |
Target: 5'- -gACACCGACCUGaccaugcuguucCCCAgCgaggcgcggucggUGGCCGAg -3' miRNA: 3'- gaUGUGGUUGGAC------------GGGUgG-------------ACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 13999 | 0.69 | 0.304503 |
Target: 5'- gCUGCcggugGCCGACgUGCgCGCCgcgaUGGCCGGc -3' miRNA: 3'- -GAUG-----UGGUUGgACGgGUGG----ACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 26257 | 0.69 | 0.289604 |
Target: 5'- -gGCACgGgcACCcGCCgGCCUGGUCGGc -3' miRNA: 3'- gaUGUGgU--UGGaCGGgUGGACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 19385 | 0.7 | 0.281656 |
Target: 5'- -gAgGCCGACCUGCUgcugucgCACCagcagggGGCCGAa -3' miRNA: 3'- gaUgUGGUUGGACGG-------GUGGa------CCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 39982 | 0.7 | 0.275283 |
Target: 5'- cCU-CGCCAACCUGCUgGCCUugcaaGCUGAa -3' miRNA: 3'- -GAuGUGGUUGGACGGgUGGAc----CGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 24133 | 0.7 | 0.275283 |
Target: 5'- gUAguCCAGCCggcUGCgCGCCUGGCCc- -3' miRNA: 3'- gAUguGGUUGG---ACGgGUGGACCGGcu -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 31581 | 0.7 | 0.268338 |
Target: 5'- aUACGCuCAugCaauCCgGCCUGGCCGAa -3' miRNA: 3'- gAUGUG-GUugGac-GGgUGGACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 29390 | 0.7 | 0.254872 |
Target: 5'- -aACGCCGGCCaagggcGCCCAgCgcGGCCGAc -3' miRNA: 3'- gaUGUGGUUGGa-----CGGGUgGa-CCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 40470 | 0.7 | 0.254872 |
Target: 5'- uCUAUACCGACgacacgGCgaCCACCUGGgCCGAu -3' miRNA: 3'- -GAUGUGGUUGga----CG--GGUGGACC-GGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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