miRNA display CGI


Results 21 - 40 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26815 5' -58.2 NC_005809.1 + 20882 0.67 0.424905
Target:  5'- -aACcUCGACCUGUCgCACCUucuGGCUGAc -3'
miRNA:   3'- gaUGuGGUUGGACGG-GUGGA---CCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 22787 0.67 0.419188
Target:  5'- uCUACcggGCCGGCCUGgcaaucagugaagaCCGCCucgUGGCCGGc -3'
miRNA:   3'- -GAUG---UGGUUGGACg-------------GGUGG---ACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 40138 0.67 0.415403
Target:  5'- -gGCGCCGAUCUucgagGCCgGCCUGcuGCCGu -3'
miRNA:   3'- gaUGUGGUUGGA-----CGGgUGGAC--CGGCu -5'
26815 5' -58.2 NC_005809.1 + 5508 0.67 0.415403
Target:  5'- -aGCGCCAACUcggUGCCUugguaguuCCaGGCCGGc -3'
miRNA:   3'- gaUGUGGUUGG---ACGGGu-------GGaCCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 13376 0.67 0.415403
Target:  5'- -cGCGuCCGACCUGCCggucauCACCgaGGCCc- -3'
miRNA:   3'- gaUGU-GGUUGGACGG------GUGGa-CCGGcu -5'
26815 5' -58.2 NC_005809.1 + 23880 0.67 0.415403
Target:  5'- gCUGCuGCUGACCgagGCCCGCgUgguguaacaGGCCGGg -3'
miRNA:   3'- -GAUG-UGGUUGGa--CGGGUGgA---------CCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 34012 0.67 0.415402
Target:  5'- -cGCGCCuguCgCUGCCCGCCaucGGCgCGGc -3'
miRNA:   3'- gaUGUGGuu-G-GACGGGUGGa--CCG-GCU- -5'
26815 5' -58.2 NC_005809.1 + 14498 0.67 0.412577
Target:  5'- -gACGCCGcggccACCUGCCCGCUguucgagcagaccgUcGCCGAc -3'
miRNA:   3'- gaUGUGGU-----UGGACGGGUGG--------------AcCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 32780 0.67 0.406031
Target:  5'- aCUGguUCGGCgUGCgCgACCUGGCCGc -3'
miRNA:   3'- -GAUguGGUUGgACG-GgUGGACCGGCu -5'
26815 5' -58.2 NC_005809.1 + 13290 0.67 0.396794
Target:  5'- -aGCGCCGAUUgcaGCgCGCCggGGCCGGc -3'
miRNA:   3'- gaUGUGGUUGGa--CGgGUGGa-CCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 24166 0.67 0.396794
Target:  5'- -aACGCCA-CCUucGCCgACgUGGCCGc -3'
miRNA:   3'- gaUGUGGUuGGA--CGGgUGgACCGGCu -5'
26815 5' -58.2 NC_005809.1 + 37664 0.67 0.387694
Target:  5'- -cGCuGCCGACgUuUCCACCgUGGCCGAa -3'
miRNA:   3'- gaUG-UGGUUGgAcGGGUGG-ACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 33022 0.68 0.378731
Target:  5'- --cCACCGGCgaGCagauCGCaCUGGCCGAa -3'
miRNA:   3'- gauGUGGUUGgaCGg---GUG-GACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 37578 0.68 0.377842
Target:  5'- aCUGCGCCGACCUGCUguuCGCCaacgucaUGGaaCUGAc -3'
miRNA:   3'- -GAUGUGGUUGGACGG---GUGG-------ACC--GGCU- -5'
26815 5' -58.2 NC_005809.1 + 32677 0.68 0.369909
Target:  5'- gUGCAgcUCGACaucGCCacgCGCCUGGCCGAg -3'
miRNA:   3'- gAUGU--GGUUGga-CGG---GUGGACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 3582 0.68 0.369908
Target:  5'- gUACACCGAUCcGCggCCGCCaguguUGGCCGu -3'
miRNA:   3'- gAUGUGGUUGGaCG--GGUGG-----ACCGGCu -5'
26815 5' -58.2 NC_005809.1 + 25752 0.68 0.361228
Target:  5'- aUGCGCCGcgugaaCUGCgCCGCCUGGgCGc -3'
miRNA:   3'- gAUGUGGUug----GACG-GGUGGACCgGCu -5'
26815 5' -58.2 NC_005809.1 + 30459 0.68 0.35269
Target:  5'- -cGCGCCAACCUGCCgauugaaACCgUGcucaaccaGCCGAa -3'
miRNA:   3'- gaUGUGGUUGGACGGg------UGG-AC--------CGGCU- -5'
26815 5' -58.2 NC_005809.1 + 36337 0.68 0.35269
Target:  5'- --uUACCGGCgUGCaggcCCUGGCCGAa -3'
miRNA:   3'- gauGUGGUUGgACGggu-GGACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 10975 0.68 0.344296
Target:  5'- aCUGgGCC-ACCUGUUCgGCCaGGCCGGa -3'
miRNA:   3'- -GAUgUGGuUGGACGGG-UGGaCCGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.