miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26817 5' -53.1 NC_005809.1 + 1260 1.13 0.000705
Target:  5'- gGUUAUUCCAACAACCCGGCCGACCCCg -3'
miRNA:   3'- -CAAUAAGGUUGUUGGGCCGGCUGGGG- -5'
26817 5' -53.1 NC_005809.1 + 756 0.79 0.170004
Target:  5'- ----aUCUugGGCGGCCCGGCCGGCgCCg -3'
miRNA:   3'- caauaAGG--UUGUUGGGCCGGCUGgGG- -5'
26817 5' -53.1 NC_005809.1 + 27335 0.77 0.223969
Target:  5'- cGUUGcuUUCCAcguaGGCCgGGCCGACCUCg -3'
miRNA:   3'- -CAAU--AAGGUug--UUGGgCCGGCUGGGG- -5'
26817 5' -53.1 NC_005809.1 + 4675 0.74 0.348247
Target:  5'- -----gCCAACAuugGCCUGGCUGACCUg -3'
miRNA:   3'- caauaaGGUUGU---UGGGCCGGCUGGGg -5'
26817 5' -53.1 NC_005809.1 + 21328 0.73 0.365739
Target:  5'- cUUAcgCCGACAugCUGGgcaUCGACCCCg -3'
miRNA:   3'- cAAUaaGGUUGUugGGCC---GGCUGGGG- -5'
26817 5' -53.1 NC_005809.1 + 12339 0.73 0.381078
Target:  5'- -cUGggCCAGCAACCCGcccaggacacuaccGCCGAUCCg -3'
miRNA:   3'- caAUaaGGUUGUUGGGC--------------CGGCUGGGg -5'
26817 5' -53.1 NC_005809.1 + 29328 0.73 0.383829
Target:  5'- ----gUCCAcccCGACaCCGGCCGGCCUUa -3'
miRNA:   3'- caauaAGGUu--GUUG-GGCCGGCUGGGG- -5'
26817 5' -53.1 NC_005809.1 + 10436 0.72 0.402502
Target:  5'- ---uUUCCAACAGCuuGGCaauGGCgCCCu -3'
miRNA:   3'- caauAAGGUUGUUGggCCGg--CUG-GGG- -5'
26817 5' -53.1 NC_005809.1 + 8873 0.72 0.445543
Target:  5'- -----cCCAGCAgaucgguacugaccgGCgCGGCCGACCCa -3'
miRNA:   3'- caauaaGGUUGU---------------UGgGCCGGCUGGGg -5'
26817 5' -53.1 NC_005809.1 + 6386 0.71 0.461821
Target:  5'- -----aUCAggcGCAGgCCGGCCGGCCCg -3'
miRNA:   3'- caauaaGGU---UGUUgGGCCGGCUGGGg -5'
26817 5' -53.1 NC_005809.1 + 38478 0.71 0.472153
Target:  5'- ----aUUCAGCGccgcccACCUGGCCGGCCUg -3'
miRNA:   3'- caauaAGGUUGU------UGGGCCGGCUGGGg -5'
26817 5' -53.1 NC_005809.1 + 15318 0.71 0.472153
Target:  5'- -cUGUUUguGCGGCa-GGCCGACCCUc -3'
miRNA:   3'- caAUAAGguUGUUGggCCGGCUGGGG- -5'
26817 5' -53.1 NC_005809.1 + 27912 0.71 0.4826
Target:  5'- --cGUUCuugagCAGCGGCgCGGCCGGCgCCa -3'
miRNA:   3'- caaUAAG-----GUUGUUGgGCCGGCUGgGG- -5'
26817 5' -53.1 NC_005809.1 + 14599 0.7 0.50382
Target:  5'- uGUUGUccggcgCCGGCGACgUGGCUGAUUCCu -3'
miRNA:   3'- -CAAUAa-----GGUUGUUGgGCCGGCUGGGG- -5'
26817 5' -53.1 NC_005809.1 + 37741 0.7 0.51458
Target:  5'- ---uUUCCGugAAUUCGacgacggcGCCGGCCCCg -3'
miRNA:   3'- caauAAGGUugUUGGGC--------CGGCUGGGG- -5'
26817 5' -53.1 NC_005809.1 + 11853 0.7 0.51458
Target:  5'- -----cCCAACAAUCUGGUCGGCaCCa -3'
miRNA:   3'- caauaaGGUUGUUGGGCCGGCUGgGG- -5'
26817 5' -53.1 NC_005809.1 + 24642 0.7 0.525433
Target:  5'- -----cCgGACGGCCCgaccguGGCCGGCCUCg -3'
miRNA:   3'- caauaaGgUUGUUGGG------CCGGCUGGGG- -5'
26817 5' -53.1 NC_005809.1 + 25072 0.7 0.525433
Target:  5'- ------aCGGCAACCCGcugucGUCGGCCCCc -3'
miRNA:   3'- caauaagGUUGUUGGGC-----CGGCUGGGG- -5'
26817 5' -53.1 NC_005809.1 + 41373 0.7 0.525433
Target:  5'- ----gUCCGGCGAgcgccgguauuCCCGGCCcucGACCCa -3'
miRNA:   3'- caauaAGGUUGUU-----------GGGCCGG---CUGGGg -5'
26817 5' -53.1 NC_005809.1 + 35409 0.7 0.525433
Target:  5'- ----aUCCGACAagcGCCCGGCCcuggucauccaGGCCgCa -3'
miRNA:   3'- caauaAGGUUGU---UGGGCCGG-----------CUGGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.