miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26817 5' -53.1 NC_005809.1 + 493 0.67 0.737722
Target:  5'- -----cCCAACGACaagguaCGGCCGACgaucaCCg -3'
miRNA:   3'- caauaaGGUUGUUGg-----GCCGGCUGg----GG- -5'
26817 5' -53.1 NC_005809.1 + 677 0.69 0.603364
Target:  5'- ----gUCC-ACGGCgcugCUGGCCGACCCg -3'
miRNA:   3'- caauaAGGuUGUUG----GGCCGGCUGGGg -5'
26817 5' -53.1 NC_005809.1 + 687 0.67 0.726853
Target:  5'- ------aCGGCGGCgCCGGCCGGgCCg -3'
miRNA:   3'- caauaagGUUGUUG-GGCCGGCUgGGg -5'
26817 5' -53.1 NC_005809.1 + 756 0.79 0.170004
Target:  5'- ----aUCUugGGCGGCCCGGCCGGCgCCg -3'
miRNA:   3'- caauaAGG--UUGUUGGGCCGGCUGgGG- -5'
26817 5' -53.1 NC_005809.1 + 1260 1.13 0.000705
Target:  5'- gGUUAUUCCAACAACCCGGCCGACCCCg -3'
miRNA:   3'- -CAAUAAGGUUGUUGGGCCGGCUGGGG- -5'
26817 5' -53.1 NC_005809.1 + 1683 0.67 0.737722
Target:  5'- ------aCGACAcGCCCgacuacgaagGGCCGACCCUc -3'
miRNA:   3'- caauaagGUUGU-UGGG----------CCGGCUGGGG- -5'
26817 5' -53.1 NC_005809.1 + 2423 0.67 0.682503
Target:  5'- --gGUguaCGGCAGCa-GGCCGGCCUCg -3'
miRNA:   3'- caaUAag-GUUGUUGggCCGGCUGGGG- -5'
26817 5' -53.1 NC_005809.1 + 4444 0.66 0.759107
Target:  5'- -----gCCGACAAgUCGGCCGuCgCCu -3'
miRNA:   3'- caauaaGGUUGUUgGGCCGGCuGgGG- -5'
26817 5' -53.1 NC_005809.1 + 4675 0.74 0.348247
Target:  5'- -----gCCAACAuugGCCUGGCUGACCUg -3'
miRNA:   3'- caauaaGGUUGU---UGGGCCGGCUGGGg -5'
26817 5' -53.1 NC_005809.1 + 4716 0.69 0.58083
Target:  5'- ------gCAACAACCUGuccgaucuuGCCGACCCUg -3'
miRNA:   3'- caauaagGUUGUUGGGC---------CGGCUGGGG- -5'
26817 5' -53.1 NC_005809.1 + 5820 0.68 0.626002
Target:  5'- gGUUAUccaaaUCCAGCAACUCGccgacaaacuuaGCCGAaccgugcaggcCCCCa -3'
miRNA:   3'- -CAAUA-----AGGUUGUUGGGC------------CGGCU-----------GGGG- -5'
26817 5' -53.1 NC_005809.1 + 6242 0.66 0.776855
Target:  5'- --gGUUCCAAgAggcccgcuaaggguGCCCGuGCCucACCCCu -3'
miRNA:   3'- caaUAAGGUUgU--------------UGGGC-CGGc-UGGGG- -5'
26817 5' -53.1 NC_005809.1 + 6386 0.71 0.461821
Target:  5'- -----aUCAggcGCAGgCCGGCCGGCCCg -3'
miRNA:   3'- caauaaGGU---UGUUgGGCCGGCUGGGg -5'
26817 5' -53.1 NC_005809.1 + 7124 0.67 0.682503
Target:  5'- -----gUCAugAaguACCUGGCCG-CCCCg -3'
miRNA:   3'- caauaaGGUugU---UGGGCCGGCuGGGG- -5'
26817 5' -53.1 NC_005809.1 + 7624 0.68 0.64753
Target:  5'- ----aUCCGauuaaguACGACCCGGCCGcgaGCCa- -3'
miRNA:   3'- caauaAGGU-------UGUUGGGCCGGC---UGGgg -5'
26817 5' -53.1 NC_005809.1 + 7949 0.66 0.790121
Target:  5'- ---uUUCCGACAGCuuGcCCGugGCCUCg -3'
miRNA:   3'- caauAAGGUUGUUGggCcGGC--UGGGG- -5'
26817 5' -53.1 NC_005809.1 + 8873 0.72 0.445543
Target:  5'- -----cCCAGCAgaucgguacugaccgGCgCGGCCGACCCa -3'
miRNA:   3'- caauaaGGUUGU---------------UGgGCCGGCUGGGg -5'
26817 5' -53.1 NC_005809.1 + 10436 0.72 0.402502
Target:  5'- ---uUUCCAACAGCuuGGCaauGGCgCCCu -3'
miRNA:   3'- caauAAGGUUGUUGggCCGg--CUG-GGG- -5'
26817 5' -53.1 NC_005809.1 + 11349 0.69 0.58083
Target:  5'- ---uUUCCGcCuACCUGGCCGAgcgUCCCa -3'
miRNA:   3'- caauAAGGUuGuUGGGCCGGCU---GGGG- -5'
26817 5' -53.1 NC_005809.1 + 11674 0.66 0.779941
Target:  5'- ---cUUCCGcugGCAcugcuGCCCGGCggccagccggCGGCCCUg -3'
miRNA:   3'- caauAAGGU---UGU-----UGGGCCG----------GCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.