Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26818 | 3' | -65.8 | NC_005809.1 | + | 16129 | 0.7 | 0.100892 |
Target: 5'- gCGCCGcGCGCGgCGGCCaCGUGcGCGAAc -3' miRNA: 3'- aGCGGC-CGUGCgGCCGG-GUGC-CGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 1132 | 0.7 | 0.08805 |
Target: 5'- cCGCgCGcGUuacuggACGCCGGUUCGCGGCGAc -3' miRNA: 3'- aGCG-GC-CG------UGCGGCCGGGUGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 18562 | 0.7 | 0.090487 |
Target: 5'- aCGUCGGUggAgGCCGcGCUCGCGGUGAc -3' miRNA: 3'- aGCGGCCG--UgCGGC-CGGGUGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 24433 | 0.7 | 0.092989 |
Target: 5'- uUUGUCGGUgccGCGCgCGGCCU-CGGCGAc -3' miRNA: 3'- -AGCGGCCG---UGCG-GCCGGGuGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 12550 | 0.7 | 0.103384 |
Target: 5'- gCGUCGGUGaauuucuUGCCGGCCUcgcgcugcGCGGCGAu -3' miRNA: 3'- aGCGGCCGU-------GCGGCCGGG--------UGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 41584 | 0.7 | 0.103664 |
Target: 5'- gCGCgGGCA-GCgGGCUgACGGUGAAg -3' miRNA: 3'- aGCGgCCGUgCGgCCGGgUGCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 14905 | 0.7 | 0.098189 |
Target: 5'- gCGCUGGC-CGCCaacGGCaucgaCCugGGCGAAg -3' miRNA: 3'- aGCGGCCGuGCGG---CCG-----GGugCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 12679 | 0.7 | 0.092989 |
Target: 5'- aUGCCGaGCGCGUCGGCgCCAUGcGCa-- -3' miRNA: 3'- aGCGGC-CGUGCGGCCG-GGUGC-CGcuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 28718 | 0.7 | 0.092989 |
Target: 5'- cCGCCGGCACcgauCUGGCaCUGCGcGCGGAa -3' miRNA: 3'- aGCGGCCGUGc---GGCCG-GGUGC-CGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 40681 | 0.7 | 0.092989 |
Target: 5'- -gGUCGaGCGCG-CGGCCCugGGgGAAg -3' miRNA: 3'- agCGGC-CGUGCgGCCGGGugCCgCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 27518 | 0.7 | 0.100892 |
Target: 5'- gCGCUGGCauaccaGCGCCagGGCCUGCGGCc-- -3' miRNA: 3'- aGCGGCCG------UGCGG--CCGGGUGCCGcuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 21382 | 0.69 | 0.121857 |
Target: 5'- gUCGCaauGGCGCGCUgGGCCUGC-GCGAGc -3' miRNA: 3'- -AGCGg--CCGUGCGG-CCGGGUGcCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 24140 | 0.69 | 0.106508 |
Target: 5'- -aGCCGGCugcGCGCCuGGCCCagcgccucgACGGCu-- -3' miRNA: 3'- agCGGCCG---UGCGG-CCGGG---------UGCCGcuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 31970 | 0.69 | 0.121857 |
Target: 5'- aCGCCgcaGGCAC-UCGGCCUcgAUGGCGGAa -3' miRNA: 3'- aGCGG---CCGUGcGGCCGGG--UGCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 24765 | 0.69 | 0.112114 |
Target: 5'- cCGaCUGGCACcgauggacaGCCugggcguggacguGGCCCGCGGCGGg -3' miRNA: 3'- aGC-GGCCGUG---------CGG-------------CCGGGUGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 7153 | 0.69 | 0.106508 |
Target: 5'- gCGUgGGCGCGCCGuggguaGgCCGCGGCGu- -3' miRNA: 3'- aGCGgCCGUGCGGC------CgGGUGCCGCuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 7528 | 0.69 | 0.121857 |
Target: 5'- gCGuCCGaguguucuuccGCACGCUGGCUCGCGGcCGGGu -3' miRNA: 3'- aGC-GGC-----------CGUGCGGCCGGGUGCC-GCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 1294 | 0.69 | 0.109425 |
Target: 5'- cCGCCcaCAcCGCCGcGCCCAgGGCGAc -3' miRNA: 3'- aGCGGccGU-GCGGC-CGGGUgCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 28553 | 0.69 | 0.118631 |
Target: 5'- cUUG-CGGC-CGCCGGCCauCGCGGCGc- -3' miRNA: 3'- -AGCgGCCGuGCGGCCGG--GUGCCGCuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 23568 | 0.69 | 0.121857 |
Target: 5'- aUCGCCGGCAggUGCgGGCggGgGGCGAc -3' miRNA: 3'- -AGCGGCCGU--GCGgCCGggUgCCGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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