Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26818 | 3' | -65.8 | NC_005809.1 | + | 31025 | 0.66 | 0.185703 |
Target: 5'- cUUGCCGGCcgaggcaaucGCGCgGGCCaACGugcGCGAAg -3' miRNA: 3'- -AGCGGCCG----------UGCGgCCGGgUGC---CGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 9067 | 0.66 | 0.185703 |
Target: 5'- cCGCCuGCugGaaGcGCCCccgcGCGGCGAGg -3' miRNA: 3'- aGCGGcCGugCggC-CGGG----UGCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 20955 | 0.66 | 0.185225 |
Target: 5'- gUUGCCGGCA-GUCGGUuccguggucgaaaUCACGGCGc- -3' miRNA: 3'- -AGCGGCCGUgCGGCCG-------------GGUGCCGCuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 604 | 0.66 | 0.184272 |
Target: 5'- cCGCCuGCGgGUCGGCCagcagcgccguggaCACGGCGu- -3' miRNA: 3'- aGCGGcCGUgCGGCCGG--------------GUGCCGCuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 1706 | 0.66 | 0.180969 |
Target: 5'- uUCGCC-GUggGCCGGCgUGCcGGCGAGg -3' miRNA: 3'- -AGCGGcCGugCGGCCGgGUG-CCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 25978 | 0.66 | 0.180969 |
Target: 5'- uUCcUCGGUuuccuCGCCGGUCUGCGGCGu- -3' miRNA: 3'- -AGcGGCCGu----GCGGCCGGGUGCCGCuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 37058 | 0.66 | 0.180969 |
Target: 5'- -gGCCGGCAUaCUccacgaauuuGGCCCAcuCGGCGGGg -3' miRNA: 3'- agCGGCCGUGcGG----------CCGGGU--GCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 16802 | 0.66 | 0.180969 |
Target: 5'- gUUGCCaGUugGUCGcGCCCA-GGCGGc -3' miRNA: 3'- -AGCGGcCGugCGGC-CGGGUgCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 18143 | 0.67 | 0.17818 |
Target: 5'- gCGCCGGCuuCGgCGGCCCAgcacgcaccccgcgcCGGUa-- -3' miRNA: 3'- aGCGGCCGu-GCgGCCGGGU---------------GCCGcuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 25148 | 0.67 | 0.176342 |
Target: 5'- gCGCCgGGCGCGCUGcGCUgggUGGCGAu -3' miRNA: 3'- aGCGG-CCGUGCGGC-CGGgu-GCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 33639 | 0.67 | 0.176342 |
Target: 5'- cCGCUGGCAauuacgGCaCGGCCacCGCuGGCGAGa -3' miRNA: 3'- aGCGGCCGUg-----CG-GCCGG--GUG-CCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 24012 | 0.67 | 0.176342 |
Target: 5'- -gGUgGGCGCGUCGGCCaauuCaGCGAAg -3' miRNA: 3'- agCGgCCGUGCGGCCGGgu--GcCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 40610 | 0.67 | 0.176342 |
Target: 5'- gCaCCGGCAUaCCGGCCgccuCGGCGAc -3' miRNA: 3'- aGcGGCCGUGcGGCCGGgu--GCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 25733 | 0.67 | 0.174975 |
Target: 5'- cCGCCGGCugaugacguacaugACGCCGGCagaacucgCCGaGGUGGAc -3' miRNA: 3'- aGCGGCCG--------------UGCGGCCG--------GGUgCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 23091 | 0.67 | 0.171821 |
Target: 5'- cUCGCCccgACGCCaacggcggcGCCCACGGCGAc -3' miRNA: 3'- -AGCGGccgUGCGGc--------CGGGUGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 33399 | 0.67 | 0.171821 |
Target: 5'- cCGCUGGCAauuacgGCaCGGCCacCGCuGGCGAAu -3' miRNA: 3'- aGCGGCCGUg-----CG-GCCGG--GUG-CCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 33543 | 0.67 | 0.171821 |
Target: 5'- cCGCUGGCAauuacgGCaCGGCCacCGCuGGCGAAu -3' miRNA: 3'- aGCGGCCGUg-----CG-GCCGG--GUG-CCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 40691 | 0.67 | 0.171821 |
Target: 5'- uUCGCCcacccGGCcaGCGCCGGCC-ACGGgcUGAAc -3' miRNA: 3'- -AGCGG-----CCG--UGCGGCCGGgUGCC--GCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 13078 | 0.67 | 0.171821 |
Target: 5'- gUCGCCacuGCGCuGCgCGGCCUguacgagaACGGCGGg -3' miRNA: 3'- -AGCGGc--CGUG-CG-GCCGGG--------UGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 38070 | 0.67 | 0.171821 |
Target: 5'- gUCGCCgaGGCGCuGCuCGGUgCGCcaGGCGAGg -3' miRNA: 3'- -AGCGG--CCGUG-CG-GCCGgGUG--CCGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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