Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26818 | 5' | -58.6 | NC_005809.1 | + | 1737 | 0.93 | 0.004153 |
Target: 5'- uACCUGCGCGGCAGCAU-ACGCGCAAAc -3' miRNA: 3'- -UGGACGCGCCGUCGUAgUGCGCGUUU- -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 36100 | 0.79 | 0.051161 |
Target: 5'- gGCCUGCGCGGCGuGCAguUCcUGCGCGAc -3' miRNA: 3'- -UGGACGCGCCGU-CGU--AGuGCGCGUUu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 26273 | 0.76 | 0.086986 |
Target: 5'- gGCCUG-GuCGGCucgcGCAUCGCGCGCGAu -3' miRNA: 3'- -UGGACgC-GCCGu---CGUAGUGCGCGUUu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 4118 | 0.75 | 0.089559 |
Target: 5'- aGCCUGCGCuGCAGCGUUGCuucccgGCGCAu- -3' miRNA: 3'- -UGGACGCGcCGUCGUAGUG------CGCGUuu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 8258 | 0.74 | 0.109381 |
Target: 5'- gGCCgUGCGCgaugaaaucgccGGCAGCAUCcgggcgcACGCGCAGGg -3' miRNA: 3'- -UGG-ACGCG------------CCGUCGUAG-------UGCGCGUUU- -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 16128 | 0.73 | 0.137873 |
Target: 5'- cGCCgcGCGCGGCGGC--CACGUGCGc- -3' miRNA: 3'- -UGGa-CGCGCCGUCGuaGUGCGCGUuu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 8654 | 0.73 | 0.141831 |
Target: 5'- gGCCUucaucGCGCGGuCGGCAUUGCGUGCc-- -3' miRNA: 3'- -UGGA-----CGCGCC-GUCGUAGUGCGCGuuu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 326 | 0.72 | 0.150059 |
Target: 5'- uACCgucagGCugGCGGUGGCGUCGCGCaGCAGg -3' miRNA: 3'- -UGGa----CG--CGCCGUCGUAGUGCG-CGUUu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 37439 | 0.72 | 0.163217 |
Target: 5'- cGCCUGCGCGGCAcguuGCAguUCAacgGCGCc-- -3' miRNA: 3'- -UGGACGCGCCGU----CGU--AGUg--CGCGuuu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 7311 | 0.71 | 0.191098 |
Target: 5'- gACCUGgGCGGCcGaCAUCGCcgagggugagcgcgGCGCAGAu -3' miRNA: 3'- -UGGACgCGCCGuC-GUAGUG--------------CGCGUUU- -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 12678 | 0.71 | 0.192675 |
Target: 5'- uGCCgaGCGCGuCGGCGcCAUGCGCAAAu -3' miRNA: 3'- -UGGa-CGCGCcGUCGUaGUGCGCGUUU- -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 27904 | 0.7 | 0.202934 |
Target: 5'- aGCagcgGCGCGGCcggcgccaccgcgGGCAgCGCGCGCGAGg -3' miRNA: 3'- -UGga--CGCGCCG-------------UCGUaGUGCGCGUUU- -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 1036 | 0.7 | 0.209087 |
Target: 5'- gGCCacgGCcgGCGGCAGCAUguCGcCGCGAAc -3' miRNA: 3'- -UGGa--CG--CGCCGUCGUAguGC-GCGUUU- -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 22487 | 0.7 | 0.21482 |
Target: 5'- cGCCgucaagGCGUGGCuGGCGaacgUCACGCGCu-- -3' miRNA: 3'- -UGGa-----CGCGCCG-UCGU----AGUGCGCGuuu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 9202 | 0.7 | 0.226691 |
Target: 5'- gGCCUGCuCGGCGGCG-CG-GCGCAc- -3' miRNA: 3'- -UGGACGcGCCGUCGUaGUgCGCGUuu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 34080 | 0.7 | 0.226691 |
Target: 5'- cGCCgaugGCG-GGCAGCGaCAgGCGCGAc -3' miRNA: 3'- -UGGa---CGCgCCGUCGUaGUgCGCGUUu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 35938 | 0.7 | 0.232832 |
Target: 5'- aACCUGUacguguccGCGcGCAGCGcCACGCGCc-- -3' miRNA: 3'- -UGGACG--------CGC-CGUCGUaGUGCGCGuuu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 14725 | 0.69 | 0.239113 |
Target: 5'- cCCUGCGCccGGUAGCcccaggcagUACGCGCAGc -3' miRNA: 3'- uGGACGCG--CCGUCGua-------GUGCGCGUUu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 14231 | 0.69 | 0.258806 |
Target: 5'- uCCUugGCGCGGUuaaguGCGUCguccACGCGCAAc -3' miRNA: 3'- uGGA--CGCGCCGu----CGUAG----UGCGCGUUu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 33883 | 0.69 | 0.271951 |
Target: 5'- aAUCUGCGCGGC-GCA-CACcugggcgGCGCAGc -3' miRNA: 3'- -UGGACGCGCCGuCGUaGUG-------CGCGUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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