miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26818 5' -58.6 NC_005809.1 + 326 0.72 0.150059
Target:  5'- uACCgucagGCugGCGGUGGCGUCGCGCaGCAGg -3'
miRNA:   3'- -UGGa----CG--CGCCGUCGUAGUGCG-CGUUu -5'
26818 5' -58.6 NC_005809.1 + 454 0.68 0.287098
Target:  5'- -gCUGCGCGGcCAGCuugCGgGCGCu-- -3'
miRNA:   3'- ugGACGCGCC-GUCGua-GUgCGCGuuu -5'
26818 5' -58.6 NC_005809.1 + 1036 0.7 0.209087
Target:  5'- gGCCacgGCcgGCGGCAGCAUguCGcCGCGAAc -3'
miRNA:   3'- -UGGa--CG--CGCCGUCGUAguGC-GCGUUU- -5'
26818 5' -58.6 NC_005809.1 + 1102 0.67 0.368272
Target:  5'- gGCCgUGuCGC-GCGGCAUguCGCGCAu- -3'
miRNA:   3'- -UGG-AC-GCGcCGUCGUAguGCGCGUuu -5'
26818 5' -58.6 NC_005809.1 + 1361 0.67 0.325813
Target:  5'- cGCCcuggGCGCGGCGGUGUgGgCGgGCAu- -3'
miRNA:   3'- -UGGa---CGCGCCGUCGUAgU-GCgCGUuu -5'
26818 5' -58.6 NC_005809.1 + 1737 0.93 0.004153
Target:  5'- uACCUGCGCGGCAGCAU-ACGCGCAAAc -3'
miRNA:   3'- -UGGACGCGCCGUCGUAgUGCGCGUUU- -5'
26818 5' -58.6 NC_005809.1 + 1883 0.69 0.272658
Target:  5'- cGCCU-CGUGGUcGgGUCAUGCGCAAu -3'
miRNA:   3'- -UGGAcGCGCCGuCgUAGUGCGCGUUu -5'
26818 5' -58.6 NC_005809.1 + 2214 0.67 0.342349
Target:  5'- cCCU-CGUcgGGUAGCAcCACGCGCAGc -3'
miRNA:   3'- uGGAcGCG--CCGUCGUaGUGCGCGUUu -5'
26818 5' -58.6 NC_005809.1 + 2369 0.68 0.302134
Target:  5'- gGCCUGCacGUGGCAGaCGccCGCGUGCGu- -3'
miRNA:   3'- -UGGACG--CGCCGUC-GUa-GUGCGCGUuu -5'
26818 5' -58.6 NC_005809.1 + 3108 0.67 0.359483
Target:  5'- gACCUGaUGCGGCGuCAUaGCGUGCGGu -3'
miRNA:   3'- -UGGAC-GCGCCGUcGUAgUGCGCGUUu -5'
26818 5' -58.6 NC_005809.1 + 4118 0.75 0.089559
Target:  5'- aGCCUGCGCuGCAGCGUUGCuucccgGCGCAu- -3'
miRNA:   3'- -UGGACGCGcCGUCGUAGUG------CGCGUuu -5'
26818 5' -58.6 NC_005809.1 + 5578 0.67 0.367386
Target:  5'- gGCCgGCGUguccuacgacuuuGGCAGCAUCGC-CGUAc- -3'
miRNA:   3'- -UGGaCGCG-------------CCGUCGUAGUGcGCGUuu -5'
26818 5' -58.6 NC_005809.1 + 6342 0.67 0.359483
Target:  5'- gACCUGUuCGGCcuGCccaGCGCGCAGAu -3'
miRNA:   3'- -UGGACGcGCCGu-CGuagUGCGCGUUU- -5'
26818 5' -58.6 NC_005809.1 + 6714 0.67 0.350842
Target:  5'- gACCUgaGCGCGGacacucCGGCcaaGCGCGCGAAg -3'
miRNA:   3'- -UGGA--CGCGCC------GUCGuagUGCGCGUUU- -5'
26818 5' -58.6 NC_005809.1 + 6809 0.67 0.359483
Target:  5'- gACCUuuccgcuauugaGCGCGGCGGCccaGCGCaGCGGc -3'
miRNA:   3'- -UGGA------------CGCGCCGUCGuagUGCG-CGUUu -5'
26818 5' -58.6 NC_005809.1 + 7311 0.71 0.191098
Target:  5'- gACCUGgGCGGCcGaCAUCGCcgagggugagcgcgGCGCAGAu -3'
miRNA:   3'- -UGGACgCGCCGuC-GUAGUG--------------CGCGUUU- -5'
26818 5' -58.6 NC_005809.1 + 8120 0.68 0.279804
Target:  5'- cACC-GCGCGGcCGGCGUUgguuguggGCGUGCGGGu -3'
miRNA:   3'- -UGGaCGCGCC-GUCGUAG--------UGCGCGUUU- -5'
26818 5' -58.6 NC_005809.1 + 8258 0.74 0.109381
Target:  5'- gGCCgUGCGCgaugaaaucgccGGCAGCAUCcgggcgcACGCGCAGGg -3'
miRNA:   3'- -UGG-ACGCG------------CCGUCGUAG-------UGCGCGUUU- -5'
26818 5' -58.6 NC_005809.1 + 8654 0.73 0.141831
Target:  5'- gGCCUucaucGCGCGGuCGGCAUUGCGUGCc-- -3'
miRNA:   3'- -UGGA-----CGCGCC-GUCGUAGUGCGCGuuu -5'
26818 5' -58.6 NC_005809.1 + 9202 0.7 0.226691
Target:  5'- gGCCUGCuCGGCGGCG-CG-GCGCAc- -3'
miRNA:   3'- -UGGACGcGCCGUCGUaGUgCGCGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.